HsaEX1045045 @ hg38
Exon Skipping
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr5:178694605-178697695:-
Coord C1 exon
chr5:178697586-178697695
Coord A exon
chr5:178695287-178695598
Coord C2 exon
chr5:178694605-178694947
Length
312 bp
Sequences
Splice sites
3' ss Seq
ATATTCCTCTTTCCTTCCAGTCC
3' ss Score
10.27
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTCCACTAGAGGAGAGTAAGTGCCAGTGTTCCGCCAACTCAGGAACTGACCAGACCCTGCAGGCACAGTGAGAAGACTCCCGGGAGAAAACTCAGGAGTAAAAATGGAG
Seq A exon
TCCAGTCAGTTAAACCTTGGAGTGACCAGGAAATCCGGAGTTTCCTGCAAGAATGGGAATTTCTTGAACGTGAGGTGTACAGGGTGAAGAAGAAGTATCACATAGTATCAAAAGCAATTGCTCAGCGTCTCAAGCAGAGGGGTATCAACAAGAGCTGGAAGGAATGTCTCCAGATGCTAATAAGCTTGCAGGACTTATACTTCACTATTCAGGAGGCCAACCAGAGGCCAAGGTGCCAACCCTTGCCATGTCCTTATGGTGAGGCCCTGCACAGGATTCTGGGGTACAGATGGAAGATCAGCGTCTTCTCAG
Seq C2 exon
GTCCTCCCTGTGCAGATGTGGTTAACCTCGCACCTCCCGAGCACCCGCCCCAGGCCTATGGCGTTCCCATAGTCTTTCAGGAGCCGATGTGGGCCCCAACACCTGTGATCTATGTGGAAAATCCTCAGGTACCCGGATGGGAGCCCTGGAACATGAATGGTCATGTTCCATATATGTATCCTGCTTTGCCTCCGGCAGCCCCAGGCCCCCTGACACAGTGGGCCATCTCTACTGACTGATCCAGGTCTTGAAGACATTTAGAATCTGGATCCTGATTCATCAGAAAGACTGAAAAACAGCACAATCTGTGTGTGTTAGTGAATGACTCCTTCCTCTCCTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTAGAGGAGAGTAAGTGCCA
R:
TCAGTAGAGATGGCCCACTGT
Band lengths:
342-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains