MmuEX7006734 @ mm10
Exon Skipping
Gene
ENSMUSG00000061469 | Gm12569
Description
predicted gene 12569 [Source:MGI Symbol;Acc:MGI:3650740]
Coordinates
chr11:51233465-51235053:+
Coord C1 exon
chr11:51233465-51233552
Coord A exon
chr11:51234051-51234356
Coord C2 exon
chr11:51234652-51235053
Length
306 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTTCGTCCCTTGCAGGTC
3' ss Score
10.75
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAAGAAGCAAGCCAAGGTCAAAGTTTGGGAAGCATCGAAGAATTGAATGTGGGAAGGAGTGAGGAGGAGGCAGAACAAAAGCCCTCAG
Seq A exon
GTCATTCCCGTAGCTCATGGACCGACTCTGAAATCAGGATCTTCCTGCAGGAGTGGGAAGTAGTTGAACAGGAAGTGAGCCACACAAGCAACAAGATTCACAAGAAGACCAAGTTTCTTTGTCAGCGCCTCTATCATCGGGGCCTGAAGAAGAGCTGGAAAAGCTGTTTCCACCTACTGCGGAACCTGCATGATCTGCACGAGACTCTCTGTAATGAGAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCAGAGGCCCTGTACAAGATCCTGGGCTCCAGCCCCCAGGGAAGCCATGTCCCAG
Seq C2 exon
GTTCTCTCTCTGATGGGGCTGGTGACCCCACGACCCCCGTGTACCCTCAGCCTCCCAGTTACCAGCCTTCGGATTATGGCATCACGGTTCCTTCTGAGCAGCTTCAAGGGAATCCGCTGCCAATGATGTCGCAGGAGGATTCCCCGTTTCCCACGTGGGAGCCCTGGAATCCCAGCTATCCATTGTCAGTTCCACACCTACTTCCTGGCTTTGTCCCAGGAGACGCCAACCTCCAGCAGCCATGGTCAACCTGTGATTTACACCAAGATCCCCAATGAAGAGAAGTGGGGATTCCCTATGTATTCCCTGTAAACCTCAGGATCATGCAGTATTGTGGACTTAGGCATCTTTCTCTACCTCCTAAGAGAAGAAAATGTGGAATCAAACGAAGGTCCATGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061469-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAAGCCAAGGTCAAAGT
R:
ATCACAGGTTGACCATGGCTG
Band lengths:
343-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types