HsaEX1045047 @ hg38
Exon Skipping
Gene
ENSG00000178338 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]
Coordinates
chr5:178846737-178888122:+
Coord C1 exon
chr5:178846737-178846755
Coord A exon
chr5:178866244-178866370
Coord C2 exon
chr5:178887856-178888122
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAACGACTTGTCCTTACAGGTG
3' ss Score
7.8
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTTTGCTCTTGTTGCCCAG
Seq A exon
GTGTCACTGACATTCGAGGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
Seq C2 exon
CTTGGGGAAAGAGCAAGACTCTGCCTCCCCCACATGCGCCCCCCCACCCCTGCCCCTGCCAGAAAAATTGTTTGTGGATCCCTGTTATCAGAATAAGGACATTCCCTCATATTCCTAGTGTGATGTGAGTTTTTATCATAAAAGGGAGTAGTATTTTGTCATGTCCATTTTCTGCATTGGTTGAAATGATCATTTTGTTTTTCTCTTCATTCTTTTAATAGATAATTGTTTGAATTTTGGTGTTAACCAATGTTTCATTCCTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178338_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains