HsaEX1045085 @ hg38
Exon Skipping
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr18:74781428-74877363:+
Coord C1 exon
chr18:74781428-74781502
Coord A exon
chr18:74803964-74804052
Coord C2 exon
chr18:74877197-74877363
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTGATTGTCCTTGGCTTCAGAGT
3' ss Score
7.41
5' ss Seq
TTTGTGAGC
5' ss Score
2.34
Exon sequences
Seq C1 exon
GGTTGCTTTTGTAATGAAGAAGCACTTAAATACTCATCTACTAGGCAAGCATGGAGTTGGCACCCCAAAAGAAAG
Seq A exon
AGTAAAGGTTGCATATCGAAAGATCGGGACGTTGCCAGGAATACAGAACAACAGGAACGCGTCGAGTGCCTCTGAAGCCCAAAGTCTTT
Seq C2 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACAGAGAAGTGGGCCCTGAACAACCACATGAAACTCCACACGGGAGAAAAGCCGTTTAAATGTACCTGGCCCACGTGCCATTACTCATTCCTCACAGCCTCCGCAATGAAAGACCACTACAGGACGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.331 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
Main Inclusion Isoform:
ENST00000299687fB30731
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCAAGCATGGAGTTGGC
R:
TTTCATTGCGGAGGCTGTGAG
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains