HsaEX6039371 @ hg38
Exon Skipping
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr18:74781428-74890038:+
Coord C1 exon
chr18:74781428-74781502
Coord A exon
chr18:74877197-74877363
Coord C2 exon
chr18:74889918-74890038
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCCTTCATGCAGGAA
3' ss Score
11.76
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGTTGCTTTTGTAATGAAGAAGCACTTAAATACTCATCTACTAGGCAAGCATGGAGTTGGCACCCCAAAAGAAAG
Seq A exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACAGAGAAGTGGGCCCTGAACAACCACATGAAACTCCACACGGGAGAAAAGCCGTTTAAATGTACCTGGCCCACGTGCCATTACTCATTCCTCACAGCCTCCGCAATGAAAGACCACTACAGGACGCACACAG
Seq C2 exon
GAGAAAAACCTTTCAAGTGCGATGAGTGTAACTTTGCCTCCACAACTCAGTCCCATTTGACTCGGCATAAACGTGTCCACACTGGAGAAAAGCCCTACAGATGCCCCTGGTGTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421_MULTIEX1-4/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTTTTGTAATGAAGAAGCACT
R:
GTAGTCACACCAGGGGCATCT
Band lengths:
194-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains