DreEX0088169 @ danRer10
Exon Skipping
Gene
ENSDARG00000087536 | znf407
Description
zinc finger protein 407 [Source:ZFIN;Acc:ZDB-GENE-110411-123]
Coordinates
chr16:6798520-6800468:+
Coord C1 exon
chr16:6798520-6798594
Coord A exon
chr16:6800016-6800182
Coord C2 exon
chr16:6800385-6800468
Length
167 bp
Sequences
Splice sites
3' ss Seq
CAATGTGCTCTCTGTTGTAGGAA
3' ss Score
10.97
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
ATGGGCATTTGTGATGAAGAAACATCTCAACACTCATCTACTGGGCAAGCATGGACTGGGCCAGCCAAAAGAGAG
Seq A exon
GAAGTTTGAGTGCGAGTTGTGTGATCGGACCTTCAGTGAGAAATGGGCACTGAATAACCACATGAAACTACACACAGGAGACAAACCCTTCAAGTGTGCATGGCCATCGTGTCATTACGCCTTCCTGACTCTCTCTGCTATGAAGGACCATTACAGGACACACACAG
Seq C2 exon
GAGAGAAGTCTTTCTTGTGTGATCTCTGTGGATTTGCTGGAGGAACTCGTCATGCGCTGACCAAACATCGTCGCCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087536-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(60.0=80.8)
A:
PF134651=zf-H2C2_2=PD(37.1=22.8),PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCATTTGTGATGAAGAAACA
R:
TGTGCTGGCGACGATGTTTG
Band lengths:
155-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]