MmuEX0053299 @ mm10
Exon Skipping
Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84350900-84412420:-
Coord C1 exon
chr18:84412292-84412420
Coord A exon
chr18:84354525-84354691
Coord C2 exon
chr18:84350900-84350983
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCCTTCATGCAGGAA
3' ss Score
11.67
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGCACCGTACGGTCGTCTGCTAACTCAAGAGTTTCCATACATTTGATGTCCATTTACGCTGCAATCGGCTGGGGGATGGCTGCTTCGTCATGGCTTGTGTATGAAGGCAGAAAAGCTTCATGTCCGCTT
Seq A exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCACATGAAACTGCACACGGGAGAAAAGCCTTTTAAGTGCACCTGGCCCACGTGCCACTACTCATTCCTCACAGCATCAGCGATGAAAGACCACTACAGGACGCACACAG
Seq C2 exon
GCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCCGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410-'12-15,'12-14,20-15=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACGGTCGTCTGCTAACTC
R:
CTGTATGCTGCCGACGGTG
Band lengths:
208-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types