GgaEX6021009 @ galGal4
Exon Skipping
Gene
ENSGALG00000013681 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr2:91604605-91673661:-
Coord C1 exon
chr2:91673587-91673661
Coord A exon
chr2:91609185-91609351
Coord C2 exon
chr2:91604605-91604694
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTCGCCCGCCCAGGAA
3' ss Score
8.74
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGTAGCTTTTGTGATGAAGAAGCATTTGAATACTCATTTACTGGGCAAGCATGGAGTTGGCACACCCAAAGAAAG
Seq A exon
GAAATTCACATGTCACCTGTGTGACAGGAGCTTCACGGAGAAGTGGGCGCTGAACAACCACATGAAGCTGCACACCGGGGAGAAGCCATTTAAGTGCACCTGGCCCACCTGCCACTACTCCTTCCTCACGGCTTCGGCGATGAAGGACCACATTAGGACTCACACAG
Seq C2 exon
CAACAGGCGAGAAGTCGTTCCTCTGTGACCTTTGTGGCTTTGCCGGCGGGACACGTCATGCCCTCACCAAGCATCGAAGGCAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013681-'11-21,'11-19,14-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(70.8=65.4)
A:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(35.7=17.5)
C2:
PF134651=zf-H2C2_2=PD(60.7=54.8),PF134651=zf-H2C2_2=PU(38.5=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTTTTGTGATGAAGAAGCA
R:
TGTGTGTTGCCTTCGATGCTT
Band lengths:
164-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]