RnoEX6059399 @ rn6
Exon Skipping
Gene
ENSRNOG00000043357 | Zfp407
Description
zinc finger protein 407 [Source:RGD Symbol;Acc:1310645]
Coordinates
chr18:81204798-81289889:-
Coord C1 exon
chr18:81289815-81289889
Coord A exon
chr18:81208388-81208554
Coord C2 exon
chr18:81204798-81204881
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCCTTCATGCAGGAA
3' ss Score
11.83
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGTTGCTTTTGTGATGAAGAAACACTTGAATACTCATCTGCTAGGCAAGCATGGAGTTGGCACCCCAAAAGAAAG
Seq A exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCATGTGAAGCTGCACACAGGAGAAAAGCCGTTTAAATGCACATGGCCCACGTGTCACTACTCGTTCCTCACGGCCTCAGCGATGAAAGACCACTACAGGACACACACAG
Seq C2 exon
GCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCTGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043357-'5-11,'5-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTTTTGTGATGAAGAAACAC
R:
CTGTATGCTGCCGACGGTG
Band lengths:
159-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]