BtaEX0041287 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022887 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr24:3994228-4076234:-
Coord C1 exon
chr24:4076160-4076234
Coord A exon
chr24:3998210-3998376
Coord C2 exon
chr24:3994228-3994311
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTCCCCACGCAGGAA
3' ss Score
12.32
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGTTGCATTTGTTATGAAGAAACACTTAAATACACATCTATTAGGCAAACATGGAGTTGGCACACCAAAAGAAAG
Seq A exon
GAAGTTCACGTGCCACTTGTGCGACAGAAGTTTCACAGAGAAATGGGCCCTCAACAACCACATGAAACTGCACACGGGGGAGAAGCCGTTCAAGTGTACCTGGCCTACCTGCCACTACTCCTTCCTCACGGCGTCCGCCATGAAAGACCACTACAGGACGCACACAG
Seq C2 exon
GCGAGAAGTCGTTCCTGTGTGACCTCTGTGGCTTTGCGGGCGGGACCCGGCACGCCCTCACCAAGCATCGCCGGCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022887_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=49.1)
C2:
PF134651=zf-H2C2_2=PU(38.5=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCATTTGTTATGAAGAAACACT
R:
GGCGATGCTTGGTGAGGG
Band lengths:
147-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development