MmuEX0053299 @ mm9
Exon Skipping
Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84485198-84601826:-
Coord C1 exon
chr18:84601752-84601826
Coord A exon
chr18:84523917-84524083
Coord C2 exon
chr18:84485198-84485376
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCCTTCATGCAGGAA
3' ss Score
11.67
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGTTGCTTTTGTGATGAAGAAACACTTAAATACTCACCTGCTAGGCAAGCACGGAGTTGGCACCCCAAAGGAAAG
Seq A exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCACATGAAACTGCACACGGGAGAAAAGCCTTTTAAGTGCACCTGGCCCACGTGCCACTACTCATTCCTCACAGCATCAGCGATGAAAGACCACTACAGGACGCACACAG
Seq C2 exon
GTCAAATTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATGAAGGTGTCAAGATGTACAACTGCCCAAAATGCGACTATGGGACGAATGTCCCCGTGGAGTTCCGAAACCACCTGAAAGAGCAGCACCCCGACATTGAGAACCCTGACCTCGCGTACTTGCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410_MULTIEX1-2/5=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(17.4=15.4)
A:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTTTTGTGATGAAGAAACAC
R:
CATGCAAGTACGCGAGGTCAG
Band lengths:
251-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: