HsaEX0073592 @ hg38
Exon Skipping
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr18:74877197-74890038:+
Coord C1 exon
chr18:74877197-74877363
Coord A exon
chr18:74881036-74881119
Coord C2 exon
chr18:74889918-74890038
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTTGTTGCAACAGGCG
3' ss Score
7.54
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACAGAGAAGTGGGCCCTGAACAACCACATGAAACTCCACACGGGAGAAAAGCCGTTTAAATGTACCTGGCCCACGTGCCATTACTCATTCCTCACAGCCTCCGCAATGAAAGACCACTACAGGACGCACACAG
Seq A exon
GCGAGAAGTCGTTTCTGTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCCTCACCAAGCATCGCAGACAGCACACAG
Seq C2 exon
GAGAAAAACCTTTCAAGTGCGATGAGTGTAACTTTGCCTCCACAACTCAGTCCCATTTGACTCGGCATAAACGTGTCCACACTGGAGAAAAGCCCTACAGATGCCCCTGGTGTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.139 C2=0.061
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
A:
PF057158=zf-piccolo=PD(46.0=82.1),PF134651=zf-H2C2_2=PD(57.7=53.6),PF134651=zf-H2C2_2=PU(34.6=32.1)
C2:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGTGCCATTACTCATT
R:
GGGGCATCTGTAGGGCTTTTC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development