RnoEX0101368 @ rn6
Exon Skipping
Gene
ENSRNOG00000043357 | Zfp407
Description
zinc finger protein 407 [Source:RGD Symbol;Acc:1310645]
Coordinates
chr18:81199039-81208554:-
Coord C1 exon
chr18:81208388-81208554
Coord A exon
chr18:81204798-81204881
Coord C2 exon
chr18:81199039-81199159
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTATTGTTGCAACAGGCG
3' ss Score
7.05
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCATGTGAAGCTGCACACAGGAGAAAAGCCGTTTAAATGCACATGGCCCACGTGTCACTACTCGTTCCTCACGGCCTCAGCGATGAAAGACCACTACAGGACACACACAG
Seq A exon
GCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCTGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAG
Seq C2 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGGCATAAGCGTGTGCACACTGGAGAGAAGCCATACAGGTGCCCTTGGTGTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043357-'8-13,'8-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.098
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGCACACAGGAGAA
R:
CGCTTATGCCGAGTCAAGTGT
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]