HsaEX0073592 @ hg19
Exon Skipping
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:19904]
Coordinates
chr18:72589153-72601994:+
Coord C1 exon
chr18:72589153-72589319
Coord A exon
chr18:72592992-72593075
Coord C2 exon
chr18:72601874-72601994
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTTGTTGCAACAGGCG
3' ss Score
7.54
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACAGAGAAGTGGGCCCTGAACAACCACATGAAACTCCACACGGGAGAAAAGCCGTTTAAATGTACCTGGCCCACGTGCCATTACTCATTCCTCACAGCCTCCGCAATGAAAGACCACTACAGGACGCACACAG
Seq A exon
GCGAGAAGTCGTTTCTGTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCCTCACCAAGCATCGCAGACAGCACACAG
Seq C2 exon
GAGAAAAACCTTTCAAGTGCGATGAGTGTAACTTTGCCTCCACAACTCAGTCCCATTTGACTCGGCATAAACGTGTCCACACTGGAGAAAAGCCCTACAGATGCCCCTGGTGTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.098
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGTGCCATTACTCATT
R:
GGGGCATCTGTAGGGCTTTTC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)