Special

MmuEX0053300 @ mm10

Exon Skipping

Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84342946-84354691:-
Coord C1 exon
chr18:84354525-84354691
Coord A exon
chr18:84350900-84350983
Coord C2 exon
chr18:84342946-84343066
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTATTGTTGCAACAGGCG
3' ss Score
7.05
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCACATGAAACTGCACACGGGAGAAAAGCCTTTTAAGTGCACCTGGCCCACGTGCCACTACTCATTCCTCACAGCATCAGCGATGAAAGACCACTACAGGACGCACACAG
Seq A exon
GCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCCGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAG
Seq C2 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGTCATAAGCGTGTGCACACTGGAGAGAAGCCATACAGGTGCCCTTGGTGTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410-'20-16,'20-15,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.138 C2=0.098
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)

							
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)

							
C2:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000118361





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr18:74881036-74881119 
ALTERNATIVE
HsaEX0073592
(ZNF407)
Human
(hg19)
chr18:72592992-72593075 
HIGH PSI
HsaEX0073592
(ZNF407)
Rat
(rn6)
chr18:81204798-81204881 
HIGH PSI
RnoEX0101368
(Zfp407)
Cow
(bosTau6)
chr24:3994228-3994311 
Chicken
(galGal4)
chr2:91604605-91604688 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr19:21488477-21488550 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGGCCTTGAACAACCACATGA

				
R: 
GGGTTGTGGAGGCGAAGTTAC

				
Band lengths: 
171-255

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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