HsaEX1045087 @ hg38
Exon Skipping
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr19:37080345-37089127:+
Coord C1 exon
chr19:37080345-37080388
Coord A exon
chr19:37085026-37085058
Coord C2 exon
chr19:37089039-37089127
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTCTTACTTTCAGCTT
3' ss Score
10.34
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
Seq A exon
CTTCACTTGCTCTTCTTTTTCCAGCTTCCTAAG
Seq C2 exon
CTCTGCATTCTCCAGACTCTGTGCTTTCCTAAGATAGGAACCCAGAAGAGGACTGATCATTTCTTGCAGCTCTAAAAACCATGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050_MULTIEX1-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAGGAGAAAGAATGGC
R:
GCCATGGTTTTTAGAGCTGCA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains