HsaEX1045089 @ hg38
Exon Skipping
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr19:37080345-37130314:+
Coord C1 exon
chr19:37080345-37080388
Coord A exon
chr19:37128877-37128906
Coord C2 exon
chr19:37130144-37130314
Length
30 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTACTCAGAGTTCACATC
3' ss Score
-13.36
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
Seq A exon
ATCTTTCTCGGCATCAGAGAATTCATACTG
Seq C2 exon
CTGGAGCTCCGTTACTCTCATGGGGACTTTGAGAATGGTATCTGGGTGTTATGGATCATGGAGCAGAAATACAGAAGGAGTCTGCAACCCTGATGACTTTGTGGAACAGCCATACTAGCTCTGGTCTGCTTGCCTCCTGTTTCTCTTTAAATAAAATTAAACATCTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050_MULTIEX1-8/8=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTTTCAGTAGCAATGTCC
R:
TCATCAGGGTTGCAGACTCCT
Band lengths:
121-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains