HsaEX1045088 @ hg38

Exon Skipping

Gene

ENSG00000197050 | ZNF420

Description

zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]

Coordinates

chr19:37090995-37130314:+

Coord C1 exon

chr19:37090995-37091121

Coord A exon

chr19:37127128-37127314

Coord C2 exon

chr19:37130144-37130314

Length

187 bp

Sequences

Splice sites

3' ss Seq

TATTCTCTCTTATCTTTCAGACT

3' ss Score

11.11

5' ss Seq

CAGGCAAGG

5' ss Score

3.33

Exon sequences

Seq C1 exon

AAATTAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGAATGCCTGGACTCTGCTCAGAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTGGTATCACTAG

Seq A exon

ACTTGCCTTCAAGGTGTGCAAGTAAGGACTTATCTCCAGAAAAGAACACTTATGAAACAGAATTATCCCAATGGGAAATGAGTGACAGACTTGAAAACTGTGATCTTGAAGAGTCCAATTCCAGGGATTATTTGGAAGCCAAAGGCAAGATGGAGAAGCAACAAGAAAATCAGAAGGAATATTTCAG

Seq C2 exon

CTGGAGCTCCGTTACTCTCATGGGGACTTTGAGAATGGTATCTGGGTGTTATGGATCATGGAGCAGAAATACAGAAGGAGTCTGCAACCCTGATGACTTTGTGGAACAGCCATACTAGCTCTGGTCTGCTTGCCTCCTGTTTCTCTTTAAATAAAATTAAACATCTTATTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000197050_MULTIEX1-7/8=4-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.098 C2=0.000

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)

C2:

NO

Main Inclusion Isoform:

ENSP00000306102