HsaALTD1041922-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:HGNC:26305]
Coordinates
chr19:37111516-37115165:-
Coord C1 exon
chr19:37115111-37115165
Coord A exon
NA
Coord C2 exon
chr19:37111516-37111593
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGT
5' ss Score
4.8
3' ss Seq
TGATATTTGATGTGCTGCAGAAA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGTGAAGGTACGCTCGAGCGTGGTCAATGAGGACAAGTCAACGAGAGATTCCTGA
Seq A exon
NA
Seq C2 exon
AAACGAGAGACAAATTAATTGACTGTTACACATTTCTGCAAGCAGAGGTTGCCAACGCAGGACTGGCAATAGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-21-16,22-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGGTACGCTCGAGC
R:
AGATGCTATTGCCAGTCCTGC
Band lengths:
132-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains