HsaEX7010501 @ hg38
Exon Skipping
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:HGNC:26305]
Coordinates
chr19:37109390-37115165:-
Coord C1 exon
chr19:37115036-37115165
Coord A exon
chr19:37111516-37111593
Coord C2 exon
chr19:37109390-37109855
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGATATTTGATGTGCTGCAGAAA
3' ss Score
6.47
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTGAAGGTACGCTCGAGCGTGGTCAATGAGGACAAGTCAACGAGAGATTCCTGAGTACGTCTATGGTCACCCTTTGCGGTAAACTTGTGCGCTCAGAAGAAGCCAGGGTAACAATGGGACAAACTAAAA
Seq A exon
AAACGAGAGACAAATTAATTGACTGTTACACATTTCTGCAAGCAGAGGTTGCCAACGCAGGACTGGCAATAGCATCTG
Seq C2 exon
AAATCAGACTACTACTCCTGCAGAACAACATCTTACTGGTAAAAAAAAGAATAGCCCACATGAAGGAAAACTGATTTGGTGGAAAGACAACAACAATAAGACATGGGAAATAGGGAAGGTGGTAACGTGGAGGAGAGGTTTTGCTTGTGTTTCACCAGGAGAAAATCAGCTTCCTGTTTGGATACCAACTAGACATTTGAAGTTCTACAATGAACCTGTCGGAGATGCAAAGAAAAGCACCTCCACGGAGACAGAAACACTGCAATCAAGCACCATCAACTCACAAGATAAAATGGTGATGTCAGAAGAATAGATGAAGTTGCCATTCACCAAGAAGGCAGAGCCGCCGACTTGGGCACAATTAAAGAAGCTGACACAGTTAGCTAAAAAAGGCCTTGAGAACACAAAGGTGACACAAACTCCAGAGAGTATGCTGCTTGCAGCTTTGATGATTGTATCAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-'22-18,'22-16,24-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGGTAACAATGGGACA
R:
ACCTCTCCTCCACGTTACCAC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains