HsaALTA1053707-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr19:37128613-37130244:+
Coord C1 exon
chr19:37128613-37128906
Coord A exon
NA
Coord C2 exon
chr19:37130144-37130244
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTACAATGTGGACATCTAAGCTG
3' ss Score
-2.94
Exon sequences
Seq C1 exon
CGCGTGGCTTACTACTTATACAACATCAGAGAATTCATACTGGTGAGAAACCATATCAATGTAAGGAATGTGGGAAAGCCTTTATTCGTGGTTCACAGTTGACTCAACATCAGCGAATTCACACTGGAGAAAAACCCTATGAATGCAAGGAGTGTGGCAAGGCCTTTAGTCATGGCTCTCAGCTTACTCTACATCAGAGAATCCATACTGGTGAGAAGCCCTATGAATGCAGAGAATGTAGAAAGGCCTTTACTCAGAGTTCACATCTTTCTCGGCATCAGAGAATTCATACTG
Seq A exon
NA
Seq C2 exon
CTGGAGCTCCGTTACTCTCATGGGGACTTTGAGAATGGTATCTGGGTGTTATGGATCATGGAGCAGAAATACAGAAGGAGTCTGCAACCCTGATGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050-26-34,26-33,26-32-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCAAGGAGTGTGGCAA
R:
TCATCAGGGTTGCAGACTCCT
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains