HsaEX1045223 @ hg38
Exon Skipping
Gene
ENSG00000172006 | ZNF554
Description
zinc finger protein 554 [Source:HGNC Symbol;Acc:HGNC:26629]
Coordinates
chr19:2823040-2827743:+
Coord C1 exon
chr19:2823040-2823112
Coord A exon
chr19:2823511-2823602
Coord C2 exon
chr19:2827617-2827743
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCTCCCTGTTGGCAGGTT
3' ss Score
6.54
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
CTCTGCCTGCCCAGGAACCTGCTTTTCCCAAGAGGAGAGAATGGCTGCTGGGTACCTGCCCCGCTGGTCCCAG
Seq A exon
GTTGTCTGGTCGAGTGTTCAGCTCTCAGCAGAGAGGAGGCCTAGGAGAGGGTGGCTCCTCTCCACAGGCAAGTCATTCGGACGTCTCTGCAG
Seq C2 exon
GAATTAGTAACCTTTGAGGACGTGTCCATGGACTTCTCCCAGGAGGAGTGGGAGTTGCTGGAGCCTGCTCAGAAGAACCTGTACAGAGAGGTGATGCTGGAGAACTACAGGAACGTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172006_MULTIEX1-1/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(9.1=8.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000317243fB30812
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACCTGCTTTTCCCAA
R:
ACCACGTTCCTGTAGTTCTCCA
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains