HsaEX1045227 @ hg38
Exon Skipping
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr19:8831318-8832328:-
Coord C1 exon
chr19:8832209-8832328
Coord A exon
chr19:8831564-8831642
Coord C2 exon
chr19:8831318-8831401
Length
79 bp
Sequences
Splice sites
3' ss Seq
AGAATCTCTCTCCAGCGTAGTAA
3' ss Score
0.23
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGACCGGAAGCGGAAGCGCGGGGCGGTACCGTGGGAGGGGCCGCGCGTGGGGCAGCGGGGAGCGAGTCCCTCCGTCCCCGCGAGTCGGCGCTTTTGGCCCCGCGGGAGGGGCCGGGCTCG
Seq A exon
TAAGTTGAGCAAGTCAAATGCACACAGCGTTAAGCTGCTTTCTCCCCTCTTACGGAGCAGATGGCCAGATGGGAATCAG
Seq C2 exon
ATGAGAAAAGCATCATTCAAGCTCAGATTCGTGTTGAAGCCTGCCACAAGGTCCACCTGTTGTTGTGGGTTTTTGGGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGTCCCTCCGTCC
R:
CTGGTCACCCAAAAACCCACA
Band lengths:
145-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains