MmuEX0053445 @ mm10
Exon Skipping
Gene
ENSMUSG00000074500 | Zfp558
Description
zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]
Coordinates
chr9:18472886-18474509:-
Coord C1 exon
chr9:18474391-18474509
Coord A exon
chr9:18473150-18473269
Coord C2 exon
chr9:18472886-18472994
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCAGCCCCATCACCTTTAGGAC
3' ss Score
7.75
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
TCTTAGGAGATCTCAGTGAAAGTCATTTAACCTCCTACTCCACAAGGGGTCATGACCCACAGGTTAAGAACTGCATACAGTCCTAAGGACAGCATGTGCTTGAAGACATCTTCTGACTA
Seq A exon
GACCTCTACGTTTACTGCACGTGGAAATCACCAAAAGAGCTCTCTCTAGTCAATACATTGAGCAATTGAATAGACACATCATTCCAGCTTCTGCTGAGTTTGTGCCTGCATAGATATTAG
Seq C2 exon
ACAAGAAAAACATCATGCAAACTCAAACTTGTGTTGGACCCTCAATGTTGTGTTGAAAACGCCTGAATGTCCACCTGCCCTCATTAATCTATTAATTTCATGTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074500_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGGAGATCTCAGTGAAAGTCA
R:
TAGATTAATGAGGGCAGGTGGACA
Band lengths:
210-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types