HsaEX1045253 @ hg38
Exon Skipping
Gene
ENSG00000267470 | ZNF571-AS1
Description
ZNF571 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44324]
Coordinates
chr19:37548947-37566089:+
Coord C1 exon
chr19:37548947-37549155
Coord A exon
chr19:37549719-37549974
Coord C2 exon
chr19:37566031-37566089
Length
256 bp
Sequences
Splice sites
3' ss Seq
CACTCCTTCATCCTCTTCAGATT
3' ss Score
9.4
5' ss Seq
CAGGTCCCC
5' ss Score
0.35
Exon sequences
Seq C1 exon
GTCTGTGGCAGTGCGTCCCCTCTCCGCGGGATCGTCGCCATGGTCCTGCGATCCTAGGAGTCGGGCAAGGCCGAACCTGCCTGAAGAAACCTCAAGCGGAGATTCAAGGAAGCACCACGTGATCCCTAAGGATCCCAAAGATGCGTCGGGCATGCATGGGCGGTGTGAGGGTGCGTCTCCCTGACAGGTGTCCCCGCTGGGATTTCGAG
Seq A exon
ATTTCATTCTGGATTAAAGGATGTGTGCAGAAAAAAGGTCAGATGGGGGTGAAGATACAATCCGCTGAGGTGTGGAGGAGGTCTCGCACCTTCACCTGCAGAACAGGTGCAGACAGATGTCAAAGAAACTGTTTCCAACGCCATCCCCTTTTCCTCTTCACTGTACAACCTGTCCACACCATGGCGCTGTGCTGGCGATAGAAGACACGAGTGTTCGGAGAACCTTTGGACCGAAGACTGTCGCCTTTCTGGCCAG
Seq C2 exon
GAATTATCCGATGAAAAGTAGAAGAGGTTGAATGACTTTCAGTGGCCTTTTCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267470_MULTIEX1-1/10=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGGCAGTGCGTCC
R:
CTGTGAAGAAAAGGCCACTGA
Band lengths:
268-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains