HsaEX1045296 @ hg38
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr19:57974099-57980279:-
Coord C1 exon
chr19:57980162-57980279
Coord A exon
chr19:57978654-57979490
Coord C2 exon
chr19:57974099-57974203
Length
837 bp
Sequences
Splice sites
3' ss Seq
TACAAGCACTTACACTGCAGAGA
3' ss Score
2.82
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AATGGGTGAGAAATCTTGAAAGCAAAGCATTGATCCCAGCACAGAGCATTTTTGAGGAAGAACAATCCCATGGCATGAAGTTGGAAAGATATATATGGGATGATCCTTGGTTCTCCAG
Seq A exon
AGAAACCCTATGACTACAATGAATGTGGGACGTCTTTCATCTGGAGCTCTTACCTTATTCAACATAAGAAAACTCATACTGGAGAAAAACCCTATGAATGTGATAAATGTGGAAAAGTTTTTAGGAATCGCTCAGCCCTTACGAAACATGAACGGACTCACACTGGAATAAAACCCTATGAATGTAATAAATGTGGAAAAGCCTTCAGCTGGAATTCTCATCTTATTGTACATAAGAGAATTCATACAGGAGAAAAACCTTATGTTTGTAATGAGTGTGGGAAATCTTTCAACTGGAACTCTCATCTTATTGGACATCAGAGGACTCATACAGGAGAGAAACCTTTTGAATGTACTGAATGTGGGAAATCATTCAGCTGGAGCTCCCATCTTATTGCCCATATGAGAATGCATACTGGAGAGAAACCCTTTAAATGTGATGAATGTGAAAAAGCTTTTAGGGACTACTCAGCCCTTAGTAAACATGAAAGAACTCATTCTGGAGCAAAACCATATAAATGTACTGAATGTGGAAAATCCTTCAGCTGGAGCTCCCATCTTATTGCCCATCAGAGAACTCACACGGGAGAGAAACCATATAACTGTCAGGAATGTGGCAAAGCATTCAGAGAACGCTCAGCCCTCACTAAACATGAGATAATTCATTCTGGAATTAAGCCCTATGAATGTAATAAATGTGGAAAATCCTGTAGCCAGATGGCTCACCTTGTTAGACATCAAAGGACTCATACTGGAGAAAAACCCTATGAATGCAATAAATGTGGAAAATCCTTCAGTCAGAGCTGTCACCTTGTTGCTCATCGGAGAATTCACACTG
Seq C2 exon
GCAGTAAACGGTCACAACCACCCAGAAACATCACCAAAGAGCCCAAAGTGTTCTTTCATAAAACCCAGTTGCCTGGGATTCAAGGGGCTGCCTCGAGATCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704_MULTIEX1-2/4=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF139121=zf-C2H2_6=WD(100=4.1)
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGAGAAATCTTGAAAGCA
R:
CCGTGGATCTCGAGGCAGC
Band lengths:
222-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains