HsaEX1045297 @ hg38
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr19:57974099-57979490:-
Coord C1 exon
chr19:57978654-57979490
Coord A exon
chr19:57974312-57974350
Coord C2 exon
chr19:57974099-57974203
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTATGCTTGCCGTATGCAGATG
3' ss Score
8.12
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GAAACCTTTTGAATGTACTGAATGTGGGAAATCATTCAGCTGGAGCTCCCATCTTATTGCCCATATGAGAATGCATACTGGAGAGAAACCCTTTAAATGTGATGAATGTGAAAAAGCTTTTAGGGACTACTCAGCCCTTAGTAAACATGAAAGAACTCATTCTGGAGCAAAACCATATAAATGTACTGAATGTGGAAAATCCTTCAGCTGGAGCTCCCATCTTATTGCCCATCAGAGAACTCACACGGGAGAGAAACCATATAACTGTCAGGAATGTGGCAAAGCATTCAGAGAACGCTCAGCCCTCACTAAACATGAGATAATTCATTCTGGAATTAAGCCCTATGAATGTAATAAATGTGGAAAATCCTGTAGCCAGATGGCTCACCTTGTTAGACATCAAAGGACTCATACTGGAGAAAAACCCTATGAATGCAATAAATGTGGAAAATCCTTCAGTCAGAGCTGTCACCTTGTTGCTCATCGGAGAATTCACACTG
Seq A exon
ATGGACTCCATCCCACTGGAAACATAACAGGCTTACCAG
Seq C2 exon
GCAGTAAACGGTCACAACCACCCAGAAACATCACCAAAGAGCCCAAAGTGTTCTTTCATAAAACCCAGTTGCCTGGGATTCAAGGGGCTGCCTCGAGATCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704_MULTIEX1-3/4=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCTTGTTGCTCATCGG
R:
CCCCTTGAATCCCAGGCAAC
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains