HsaEX1045420 @ hg38
Exon Skipping
Gene
ENSG00000250312 | ZNF718
Description
zinc finger protein 718 [Source:HGNC Symbol;Acc:HGNC:26889]
Coordinates
chr4:124538-127108:+
Coord C1 exon
chr4:124538-125296
Coord A exon
chr4:126848-126921
Coord C2 exon
chr4:127008-127108
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTTTAAGACG
3' ss Score
7.74
5' ss Seq
CAGGTTCAA
5' ss Score
1.19
Exon sequences
Seq C1 exon
CGGTGAGGGACCCGCGCTCTTGTCAGTCCCCGTACAGCGGCTCTGGCCCAGCCTGCAGCCCTCCTTGTGCAGCTCTGCGCCGGTAGCCCTGCACTTTCCCCGGGCTGTGGAGTGAGTAGGAGCTCATCCGGAAGACACCGCGGCGGCCTGCGCGGTGCCGGCGTGGGAGGAGCTGTGGTCCGGAATCCCGTCCCTACTTTACCCTGTTCAGAATGAGATTGAGGCCCCATCAAAACATGGAGTTCATGTGAGCAAACAGGACTTATTAATGGGAAAGCTCTGCCGTGGCTCGTGGTTTGGGGACTGCCAGCGGGTCTTGAAGGAAAGGCTTTTGTGAGGTGTGTGAGGAAGCGAAGCAAATCACCTGCCTGCGCCAACTTTGCCGCCAGTCCCCTTGCCCTGTGCGCCTCCTCCGCGTGGCTGTTCCTGAATACGCTGGTGTCTGTTCGCATCTTTTAGAATACGCTGGTGTCGGTGCGCACAGCGCTTCTCTTAGTTCT
Seq A exon
ACGGAGTCTTCGCTGTGTCGCCAGGCTGGAGTGCAGTAGTGCGATCTCGGCTCACCGCATTCTCCACCTCCCAG
Seq C2 exon
TAGAGACGGGGTTTCGCCATGTTGGCCAGGATGGTCTCCATCTTCTGACCTCATGATCCACCGGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250312-'4-3,'4-2,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACGCTGGTGTCTGTTCGC
R:
TCACGCCTATAATCCCAGCAC
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains