HsaINT1047642 @ hg38
Intron Retention
Gene
ENSG00000250312 | ZNF718
Description
zinc finger protein 718 [Source:HGNC Symbol;Acc:HGNC:26889]
Coordinates
chr4:124480-130914:+
Coord C1 exon
chr4:124480-124673
Coord A exon
chr4:124674-130787
Coord C2 exon
chr4:130788-130914
Length
6114 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGATAAATGTGTATTTTCAGGAA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCGGCATCCGGGATCTGGCGCGGCTTTTGCTTGTAGCTCCAGCCAGAGCTCGGTTAGGGCCTCATCGCTCTGCTCCCGCTCCTTAGGGAAGCCTCGGTGATTCTGCCACAGCCTCAGCCTCTGTGGCTCTGTGACCTGCCGGTATTGGATGATTCGTATCTAAGACTCTGGGACACTCCTGAAGTCGGGAAATG
Seq A exon
GTGAGTGTGCAGGGCAGGGCGTCCCAAGGCTGTGGAGGCCTCATCGGAACCGGCGGGAAATGGCGGCGGTGGGAGGAGTCTGTGAATGGAGTTCCCGCTCAGCCCTCTGTCCTCAGTCCCCTCCGGTGAGGGACCCGCGCTCTTGTCAGTCCCCGTACAGCGGCTCTGGCCCAGCCTGCAGCCCTCCTTGTGCAGCTCTGCGCCGGTAGCCCTGCACTTTCCCCGGGCTGTGGAGTGAGTAGGAGCTCATCCGGAAGACACCGCGGCGGCCTGCGCGGTGCCGGCGTGGGAGGAGCTGTGGTCCGGAATCCCGTCCCTACTTTACCCTGTTCAGAATGAGATTGAGGCCCCATCAAAACATGGAGTTCATGTGAGCAAACAGGACTTATTAATGGGAAAGCTCTGCCGTGGCTCGTGGTTTGGGGACTGCCAGCGGGTCTTGAAGGAAAGGCTTTTGTGAGGTGTGTGAGGAAGCGAAGCAAATCACCTGCCTGCGCCAACTTTGCCGCCAGTCCCCTTGCCCTGTGCGCCTCCTCCGCGTGGCTGTTCCTGAATACGCTGGTGTCTGTTCGCATCTTTTAGAATACGCTGGTGTCGGTGCGCACAGCGCTTCTCTTAGTTCTGTGAGTAGTTCTGCCACATTATTGAACTTGAGGAGGGTGTGGGCGTCCCTGGTTTGTAGGCAGGGGTTCAGAAATGAAGACGGGTGTCCAGAGGCAGGGACTGGCGTCTGCAGGAGAGCAGCTGCGGGAAGAGTGCTGAGCTTGTGGGGTCAGCGCTGACTCTGGGTGGTGTCGTTAGTGAGTTGCTGGACACCCCGTTGGGGTTGGAGCATTGACTGGTGTTGAGGAAACTCCGCAAGTTTTCTGTCAGAAGAAAGACATGGCCGAGTCTGGGTTGGAGGAAGTCACCTGGTGTCCGCAGGAGGCGCGGCCGGGTTCTGCACAGGCGCTGTCCCGCTGGGCACTGTCCTCTTCCTCCAGGCCTCCTCCCGGGGAGAAAGGGGACTGGGAACTTAGAGGAAAGCAGTTCTAAGAAACATCCCTTCCCCGCATCCTGCTGCCAGCCCCCACCCAATGCTAACCCACTCCTGAGCACGCCCACTGGGCATTCGCACGGCCACACCTGGCCTAAGACAGGGTTCTACCCTCAGGAATTGTGCCCATGGCAGTTTTGCTCCTACAGTTTTCTGCCAAAAGCACACGCAGTGCCCAGAAGACTCCTGGCTCATCTCAACCCCAGATCTGTTTAGCAGGAGCCCGTTTCCTTCTCCAACCCAGGCTTCTGGACCATCTGATCTTAATCTCCTATGCCTTTATGGACTCAGGAATCAGTCAGTGCGTAGCCCTGCCTGGGCCTGTACCTGTAGCACAAACCAGTCCTTTCATCAGTTGTGCCCTGCCCCCACCCCATGGCTCTTGATAGCTCCTTGCTGTCTTGTGCTTTTTCCTTCCCCACAAATCCTCTTTTCTGTGCATACAGTGTGCCCAAGTTCATCCCTTACGTGCCTACAAGAATTCAGACGTTAGGGAATTCAAGACCATGCCTTAGACCTGGCTGTTGTAGGAGCAAATACAAATTAGAAGAGGCTTAATGATTTCTCTTTAGAGTGAGGGAAGAATTTTTGCTCTTCTCCCTTTTCTTAAAGCATTTAGGTGGAAAATTTTTATAATTATTTTCACCAGTTTTTGAAATATATGTAAATCATTTTTATCAGTTAAATAGGTCATTTGTCTTTTTTGACTCAGACTTGTCTTTATCTAGGACTTGGGAACTATTGCTTTGAAATGTGAATAGCAAGAATATATCCCACAGTTTCTGTAGGAGGGTGGGAGGCTGCCTTCAGCAGGTACCTGGCTCCACATTGTGGGTCTACGTCCTGTCATGAAGATGTGGGAAGTTTATTTTTCTTTTGAATATTACCAATTAGAAAACCCAGATTACCTCCCAAATTACTAGGTGAAATAATAAACTGTGTAAATGGTGCTTTCAAGTCTTCTACTTAAGAACTAATGGTGACTTTTTTTCTGTGTTTGCAGTCTCTTAGTAGATTGCCTGTGATGCACATCACATTTTGGTTTAATTATATAACAAAACATTTTCTTGCTGTTCTATTATGGTGGAAAATTTTTTTAGGATTGGAGATAATTTTTCTCTTTTTTTTTTTTTTTAAGACGGAGTCTTCGCTGTGTCGCCAGGCTGGAGTGCAGTAGTGCGATCTCGGCTCACCGCATTCTCCACCTCCCAGGTTCAAGCGATTCACCTGCTCAGCCTCCTGAGTAGTTGGGATTACAGGCGCGCCACCACACTCAGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGATGGTCTCCATCTTCTGACCTCATGATCCACCGGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCTGGCTGAAAATTTTTCTTTTAGTCATATTTTCCATGCACTGTTTAGAAGTACTGGACGTTATATACAAAGTGCCCACCAGGCTTCACTTGAGAGAAAAACCTTTCTTCTCAGGATTCCAGCCACAACCCACAATTGTATGACAAAGTGCAGCAAGGTGCTCCCCAAATCTGCAAACAAAATAGTCTCTCTATTTGGGATCTACAGTCCCTTCTAGAGCAGTTAGACTAGATTTCTACAAAAATCACTTCAGGACAGCAATCAGTTATTTCACCTCCTTCAGTGCTCCTGTCATCTTCAGATCTGACACGGATTCAGAGATCACGGGGCCCATAAACCCAACCAGGATCATACATGTGCATTGATTAAACTTGAGAACTTCAATTCTCTCCCTCCTCCCTTTGCCCAAATGCCCGCAAATGTGCATAGCTCACCAGCCCTCCAAGACCTAAATGTGCAGTTCCAAATTCTGAATTTATTTTCTGGGATTTGAGAGAAGAAAAGAACTTTTATTTGAGAAATACATGTTCTTTTAATGATCAGACCCAGAGACTGGTTAAAATGAGACCACAGTGATGTACTGTTCCCGTCTTTGAACTATTTGTCTTTTGAAATTGCTTGCTATTGGCACAAGTGGCTATAAATTAACCTAATAATGCCACACTGGACACTATAATCCACACCCAATAGCTTAACAATGTATATAACCAATCACTAACCAATGTTACTTCTGTAAATAAGAATTCCTGACAACTTTCTATCCTGCCTTCCTTTTTGCCTTTACAAATATACTTGTAATTGGAGTGTATATTCAGGTAGCTTTATACTCCAGGATTGCAGTCTTCAAGCTTTGGCCCCAGAAAACTCTCTACTTATATTATGTTTATCCCAGTATTTCCTTTTAGGTCAAAATATTCTTAAGAATGTGTTGAAGGAGCCTCCATGAGGTGATCTCTCCTCTGGTTTTACTCTGCTTACTCTAACCCCTAAGAATGTAGAGGCACATTGATCCCACCTAGAATCTGCATACAAAAGTTGGCCTCTGCCTGGGATTCCCAACACTGGACCAGACTTTGGGTTGAAGACATACGAAAAACTCACAGAAGACATTTTCTGCATCATGAGAGGTCAATGTAGACATCTTAAGCCCCATTTTTAGAGTGGGGCCCTTTGAGTTTTCCAGATCTTGTTCAGTGACCTGCTACAGCTGTGTGAGAGGCTTCTGATGGGAACAGAATCCTGTGGCAGAATCTTTAAGTGTAAACAAGCATCTTAGCAGTGGGAGGTAAGGCCACAAAATATCCAGAGCCTTAATGACAACCATAATCACAAGTGTACCTTCCTCCTCTATACTGTGTTATGGGAGTAGAGTACTTTTGTCCTTCTTCTTACCTCAGAGTTAGCTGATCAGGGACAGGGGATATCACATCTGGAGCCAAGATGTGCAGGACCACCAGGACAGCGCCATTTTCTGTTTGCACCACACAAAGTCAGCCTGAGTGTCTCCTCCGTGGATCACTATGAGGGCATCATTACTCAGCATCTTTGAGTAATGAGACATTTGAGGATGTCATGTGCAGACTGGGGTCAGTCTGACAAGGTCTAATTCTGCTCCCATTTCAGAGGAAGATAAGTGACTCATGCAGGGTTTGTTCCTCCCCTCACAGAAAGAATCTCCTTGGTTTGTACCCAGATAAGAATTGCTCCAGTTTTCTGGTTCTTTGGTGAAAAATGAGGAATCTGGAGACTCAAACTGATCAATAAGCTAATTGCTTCTATTTCATATGATCATTAGAAAAAGACATAAAGCAGTCATGGTCCCTACCATCAAGGAACTTGCAGTCTAGAGCACATGAATAAATGATTGAATTCAGCATCGTGTGTTCAGTACAAAGACAGAAACTGTATGGAGACTTAAGCTTAATTTGTGTTACTTCCCTTTTATTGTTTTGTGAGTTTTAATGCCACCATCTGATCAGCTGTTCATTGACAGAAGAGAAATTGTTGTTATTATTTGTGTTGTTTTTACCTTGCTAAGAATAAATAATTAGCTTCTAATATAATTGGTCTAGAAAAACATAAGGGTTTTGGTTAAATTCCTTGTTATTGTGTGTTATAATGTTATAAAATAGGGAATTAGCTAAAATAGATTAAGATACAGAAACTCTGGGAATCAAATTTCTCTTGGGCAGGCTTAGAAAAGACAAAACTGAAAATACTTACGGGCATAGAGAGCAGATGCCTAGGGCCCACCTTCTGTCCCAGTTCTGCCCAGATCCACCCTCTGCTGAACCTTGTCCAGGTCTTACCCCACACTGAAATCTCTCACAGAACTGCTTAGAGGAGATCAGAGTTTGGGGTGGCTACCCCTACTGCCTCTCCAGAGCTGGTGCTCACAATTTCCTGATACCCAAAAGCAGATAAATGAGGAAAAGCAATATACTTTTGTGCCTTAAATTCTTTTTTATAAAATTAAAGTCAGTGTTTCTAGAGACATCCTATCCAGCAACCTGTTCCCCATCTCTGCAGTTTCAGTGGTTTTTTTCACAAGTCTCATAATAACTACAAACACAAAAATAAAAAATTCCTCTGAATTGCACTTAGCACTTCCTTTCTGTATCTGTCCCGTCTCTCTATATTGAGCTATTATTCTACGCATTTAAAAAAAAAAACAATGATAAGAAAACAGAAGAACAAATAGAAATGCTGGGGCCCTGCATTTAAATCCTGGGAAGCATGGGACTACTTTTCAGGATGTTATAGTATTAACACACATAATGTGAACTTCCCAGCACACTGCTCTATGGCATACTTCTGAGCACATAGTACATGCTCTATAAAGATTGCATTGATGCATATACACGTTTTTCAAATGCAGACTTACTCAGACTTGCCACCATCTTCCGCCTCTGTAAACATTAAAGGGCTTGCAGAGAATGCCGTATTTCAAGATGATGATTGGTGGTCTTGTCTTCGGATGTAAAGTATTTGTGTCGTGATAAGGGTGTTGCAGTGAGGGACTCATGCTGTGACTGCTTTTTCTAGCTGAGTGGTATAATGGGTCTAGGGGGAGGAGTGTCAGCAATAAGAAGACTTGCAATAACAGGAGACTTGCAATAAGAAGCTAATTCATGGACCCTTTTCAAACCTGCAGAATTTTGTTACTTACAGTGAGGCTTTGAATACCAAATAATTTATATGCATTTTGAACCTTAGAGGCAATGCTTGGCTGAGTGACTCTTAGCCCAGTCTTGCAGTAGAATTACATGGACAGTCTGAAGAGAAACCATAACGTGTGCCCTCCCCACAGATCCTGTCTGTTTTTCTGGGTGGAAAAATTCCTGTTTTTGGTTAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACGAGGTCAGAAGATGGAGACCATCCTGGCCAACATCGTGAAACCCTGTCTCTAATAAACAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCACTTGAGCCTGGGAGGTGAAGTTTGCAGTGAGCTGAGACCGTACCACTGCACTCCAGCCTGGGCAACAGAGCGGGACTCCGTATTAAAAAAAAAAAAAGAATTCTGTCACTTGATAAATGTGTATTTTCAG
Seq C2 exon
GAACTCTTAACATTCAAGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGTCTGGACACTTCCCAGCAGAATTTATATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250312:ENST00000510175:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains