HsaEX1045430 @ hg38
Exon Skipping
Gene
ENSG00000250312 | ZNF718
Description
zinc finger protein 718 [Source:HGNC Symbol;Acc:HGNC:26889]
Coordinates
chr4:127008-262913:+
Coord C1 exon
chr4:127008-127127
Coord A exon
chr4:133270-133355
Coord C2 exon
chr4:253560-262913
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTTAAAAAAAAAAAGGTT
3' ss Score
-1.85
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
TAGAGACGGGGTTTCGCCATGTTGGCCAGGATGGTCTCCATCTTCTGACCTCATGATCCACCGGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCTGGCTGAAA
Seq A exon
GTTTGTGAATAATTTTTGTGATATCCACTACCACAGATAAGTAAAAATGCCCTCACATTCAAAGGGTTGGCCACCACTGATTTAAG
Seq C2 exon
GTGTGTGTTCTCATTTTACCCAAGATCTTTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTATACTGAGAAGATATGAGAAATGTGGACAGAAGAATTTACAATTAAGGAAAGGCTCTAAAAGTGTGAATAAGTGTAAGGTGCAGAAAGGAGGTTATAATGGACTTTACCAATGCTTATCAACTACCCAGAGCAAAATAATTCAGTGTAATACATCTGTCAAAGTTTTTCATAAATTTTCAAATTCAAACAACATAAGACATACTGGAGAGAAATCATTTAAATGTAAAAAATGTGGCAGATCATTTCGCAAGTTCCTCCAACTAACTTAACATAAGGGAATACATGCTGGAGAGATACCCTACAAATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAAGCATTACTAAATATAAGAAAATTCATGCTGGAGAGAAACCCCTCATGTGAAGAACGTGTCAGAATCTTTACCTCATCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250312_MULTIEX1-8/16=4-C2
Average complexity
C2
Mappability confidence:
91%=85=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGACGGGGTTTCGCCAT
R:
ATCTTCTATGCCCTGCACTGG
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains