HsaEX1045561 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:211636-218778:+
Coord C1 exon
chr4:211636-212781
Coord A exon
chr4:217561-217676
Coord C2 exon
chr4:218652-218778
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACATGTTTTTCAAATGCAGACT
3' ss Score
7.33
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATTATATTGTTTCCGTTTGTGAACAAGTGTGTCTGTGTGTGCGTGCGCGTGCGTGCACAATTTATAAACGGACGTAACCTCACACAACAGAAGTTTAAAAATGAACCCCCAACAGAGCCAGGCCTAGCACAGAAAGCCCTGCCTGAAAGTACCTGGAGACACGAGTCTGTCAGTCTTGCCTCATTAAGTGTATGGTCGAATTTCTGTCACTCGAATTCTGTCACTCAAAGCTTGAGGGCGTAGAGCTAGTAGTTGTATCCAATGAGGGCGCTGGACTGAGAACTGCCCAATCAGGCAAAGGAGGGGGCGGCATCCGGGATCTGGCGCCGCTTTTGCGTCAGGCTTCTGCCTGAGCTCGGTTAGGGCCTCACCGACCTGCTTCCACCCCTCAGGGAGGCCTCAGTGATTCGGCCACAGCCTCAGCCTCCGTCGCTCTGTGACCTGCGGGTATTGGATGATTCGTAGCTAAGACTCTACGACATCCCTGAAGCCGGGAAATG
Seq A exon
ACTTACTCAGACGTTTCCACCATCTCCAGCCTCTGTAACCTTTGAAGGGCCTGCAGAGAATGCCATGTTTCAGGATGACGATTGGTGGTCTTCAGATGAAAAGTATTTGTGTTGGG
Seq C2 exon
GAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCCCCAGAAGAGTGGAAATGTCTGGATCCTGCCCAGCAGAATGTATATAGAGATGTGATGTTGGAGAACTATAGAAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198155_MULTIEX1-1/5=C1-2
Average complexity
C2
Mappability confidence:
80%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGCGTCAGGCTTCTG
R:
GGGCAGGATCCAGACATTTCC
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains