HsaEX1045426 @ hg38
Exon Skipping
Gene
ENSG00000250312 | ZNF718
Description
zinc finger protein 718 [Source:HGNC Symbol;Acc:HGNC:26889]
Coordinates
chr4:201632-262913:+
Coord C1 exon
chr4:201632-201836
Coord A exon
chr4:211659-211885
Coord C2 exon
chr4:253560-262913
Length
227 bp
Sequences
Splice sites
3' ss Seq
CATGTGCCTCATTTTTCCAGGTC
3' ss Score
10.69
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
AAGCAAGCAGCAACATTGAATGCTTTATCAGGGCAATTGCTGAAGGTTTCTCTCTGGATCTGGATGAATCATAAATTTGGGCAACTCTGTAAATTCTTGGAAAAGCCTATGTGGTATCTGAGGTAATCTTTTCTACCTGATTCCATGCCACTGGTCTCCATTCCTGGGAAGAGATTCAGCACCAGCAGCACATACCACTGTGAGG
Seq A exon
GTCATGGGACGAGAGCCTGAACCTGGCTGAACTGAGGAGACCACCACACCAGCACCAAAGAGCAACTAGGAGACCGTGATATTCACGTGGACACTCTCAGCTTGCAGCCTCTGCTCTCTCTAGGGGCACTGTCCCACCCACCCTTGAGCCTGAGAAGAAAAGTTGGTAGAGAGGTTGTTCCCTCACTTCCAACAGAAAAGAGGTGTCCAGGCCCTCAATTCCCTGAG
Seq C2 exon
GTGTGTGTTCTCATTTTACCCAAGATCTTTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTATACTGAGAAGATATGAGAAATGTGGACAGAAGAATTTACAATTAAGGAAAGGCTCTAAAAGTGTGAATAAGTGTAAGGTGCAGAAAGGAGGTTATAATGGACTTTACCAATGCTTATCAACTACCCAGAGCAAAATAATTCAGTGTAATACATCTGTCAAAGTTTTTCATAAATTTTCAAATTCAAACAACATAAGACATACTGGAGAGAAATCATTTAAATGTAAAAAATGTGGCAGATCATTTCGCAAGTTCCTCCAACTAACTTAACATAAGGGAATACATGCTGGAGAGATACCCTACAAATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAAGCATTACTAAATATAAGAAAATTCATGCTGGAGAGAAACCCCTCATGTGAAGAACGTGTCAGAATCTTTACCTCATCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250312_MULTIEX1-15/16=13-C2
Average complexity
C3*
Mappability confidence:
90%=95=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTATGTGGTATCTGAGGT
R:
TGCTCTGGGTAGTTGATAAGCA
Band lengths:
303-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains