HsaEX1045424 @ hg38
Exon Skipping
Gene
ENSG00000250312 | ZNF718
Description
zinc finger protein 718 [Source:HGNC Symbol;Acc:HGNC:26889]
Coordinates
chr4:201081-262913:+
Coord C1 exon
chr4:201081-201211
Coord A exon
chr4:201632-201836
Coord C2 exon
chr4:253560-262913
Length
205 bp
Sequences
Splice sites
3' ss Seq
AACTGTTCTCCTCTCTCTAGAAG
3' ss Score
9.38
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
GTCACTACAGGAAAAGATATCTTCATTAAAGTGCAACAGCACACTGAGAGCAACACACCACCACAGCAGTTAATTTTGGAAAGGCCACTGTAAGCTCCACTAGTGACTGACATTTTACAGATGACAGATTG
Seq A exon
AAGCAAGCAGCAACATTGAATGCTTTATCAGGGCAATTGCTGAAGGTTTCTCTCTGGATCTGGATGAATCATAAATTTGGGCAACTCTGTAAATTCTTGGAAAAGCCTATGTGGTATCTGAGGTAATCTTTTCTACCTGATTCCATGCCACTGGTCTCCATTCCTGGGAAGAGATTCAGCACCAGCAGCACATACCACTGTGAGG
Seq C2 exon
GTGTGTGTTCTCATTTTACCCAAGATCTTTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTATACTGAGAAGATATGAGAAATGTGGACAGAAGAATTTACAATTAAGGAAAGGCTCTAAAAGTGTGAATAAGTGTAAGGTGCAGAAAGGAGGTTATAATGGACTTTACCAATGCTTATCAACTACCCAGAGCAAAATAATTCAGTGTAATACATCTGTCAAAGTTTTTCATAAATTTTCAAATTCAAACAACATAAGACATACTGGAGAGAAATCATTTAAATGTAAAAAATGTGGCAGATCATTTCGCAAGTTCCTCCAACTAACTTAACATAAGGGAATACATGCTGGAGAGATACCCTACAAATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAAGCATTACTAAATATAAGAAAATTCATGCTGGAGAGAAACCCCTCATGTGAAGAACGTGTCAGAATCTTTACCTCATCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250312_MULTIEX1-13/16=12-C2
Average complexity
C3*
Mappability confidence:
92%=94=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACACTGAGAGCAACACAC
R:
TGCTCTGGGTAGTTGATAAGCA
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains