HsaEX1045432 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31792630-31794869:+
Coord C1 exon
chr16:31792630-31792730
Coord A exon
chr16:31793335-31793411
Coord C2 exon
chr16:31793702-31794869
Length
77 bp
Sequences
Splice sites
3' ss Seq
AACTCCCATTTTATCCACAGAAT
3' ss Score
8.26
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTCCTTTACAGAAAGGGGCTTGGATAAGGAGGAAAGACCATCAGAAGAAAAGATAAGACACTCTCTTCTCATTCCAGTAAGAGCCACATGCAAGGCAAG
Seq A exon
AATCAGAGTCCAGCTCAGATGGGGGAACTCTAGGAAGAGAGAAATCCATTCCATGGACAGCTGCCAAGATAGAGCAG
Seq C2 exon
GACAGCATCAAGGACATGAGCCAAAAGTGCAAAAGGACTGCTTGACTTTGGAAAAGAAACCAAAGGCCTCTGACACTGTACACATCAGTGAAATGAGGAGACCCATGATGCCTGCTGTGGGGGACCCCCAGAGGCCCACACCGGGCACAGCGAGCGGCCCAGATCTCAGTCTCTAGGAGACCACCCACTACCACTTCAGAAAAGCCTGGTGACCTCTCTGCACACTCCATCTGAAGCCATTTATCACAACACAGCCCAGGTGTGGGAACAGTAGGCCTATTCTCTGCTGACCTGGGAGCAGCTGTCTGAGCTCACCTGGCTCCAGGGGCCTCTGTGCTGTGGTACAAACCTGTGCCATGGCCACCCAGGTGGCCTATGTCTTTCGCACTGAGGGCTGGCTCATCCCAGCCATACTCCCTGGTCCCTAGGGTGGAGAAGCTCAGAACTCCTCCTAGGAAGAAAATGGATCCACCCTTTCCCTGGAGAGGAGATAAAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.704 C2=1.000
Domain overlap (PFAM):
C1:
PF153151=FRG2=PU(24.3=76.5)
A:
PF153151=FRG2=FE(24.3=100)
C2:
PF153151=FRG2=PD(50.5=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCTTGGATAAGGAGGAA
R:
TGTGTACAGTGTCAGAGGCCT
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains