HsaEX1045434 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31759357-31792730:+
Coord C1 exon
chr16:31759357-31759466
Coord A exon
chr16:31760123-31760238
Coord C2 exon
chr16:31792630-31792730
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCAAAGTCTTTTCCCCACAGTGA
3' ss Score
5.91
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCAAAATAATCCTATGGTGAAAAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAAAGACAAGTGAATTTTCTGAGGGTGATGAAAGTGTTGCTTCGAAAAGGG
Seq A exon
TGATGCTCTGAAAGCCAGGACACCTAGCACAGGACCCTGGGCATAGTATGCACTCAGTACATGTGGAGCATGTTGATCAGGAACAAAAGGAGTAGCAAAGGTCAGTTCCTGCAAAG
Seq C2 exon
GTCTCCTTTACAGAAAGGGGCTTGGATAAGGAGGAAAGACCATCAGAAGAAAAGATAAGACACTCTCTTCTCATTCCAGTAAGAGCCACATGCAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302_MULTIEX1-10/10=9-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.706
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0)
A:
NA
C2:
PF153151=FRG2=PU(24.3=76.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACAAGATAATCTCTGCTTGAGA
R:
GCCTTGCATGTGGCTCTTACT
Band lengths:
183-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains