HsaEX1045438 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31753766-31792730:+
Coord C1 exon
chr16:31753766-31753900
Coord A exon
chr16:31759357-31759466
Coord C2 exon
chr16:31792630-31792730
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTATTTTATTCCAGGCA
3' ss Score
8.52
5' ss Seq
GGGGTGAAG
5' ss Score
-1
Exon sequences
Seq C1 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGG
Seq A exon
GCAAAATAATCCTATGGTGAAAAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAAAGACAAGTGAATTTTCTGAGGGTGATGAAAGTGTTGCTTCGAAAAGGG
Seq C2 exon
GTCTCCTTTACAGAAAGGGGCTTGGATAAGGAGGAAAGACCATCAGAAGAAAAGATAAGACACTCTCTTCTCATTCCAGTAAGAGCCACATGCAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302_MULTIEX1-9/10=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.107 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PD(0.1=0.0)
C2:
PF153151=FRG2=PU(24.3=76.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCATGATACTCAAGGCCTCT
R:
GCCTTGCATGTGGCTCTTACT
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains