HsaINT0188239 @ hg38
Intron Retention
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31753766-31761565:+
Coord C1 exon
chr16:31753766-31753900
Coord A exon
chr16:31753901-31759356
Coord C2 exon
chr16:31759357-31761565
Length
5456 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TATTTTGTATTTTATTCCAGGCA
3' ss Score
8.52
Exon sequences
Seq C1 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGG
Seq A exon
GTAAGTGTGAAGGTCACAATGGATATTATGATGGACATACAAAATGTAAGACAACTACCTATAACAAAAACCTCACTGTTACAGGAGGTCAAAAACATGAAAAAACTCAATTTATGTCAGTTGCTTTTTCTAAACCATGTGTTTCTGTAAGTAAGTGTCAACATCAATTTTTGAAACTTACCTTTTCTTTTAAAGGAAATTTGGATAATCCGAATAGTGACTTAGTCCATGTTTCAAATAATCATTTAAACCAATTAAAATATAGAACTGGAGTAAATGTTCAGTCAAATATTTCTGAAAAGGAGAGATTTAAAAACGAGGAGGTGATTTCTAAATATGATCAATTTGATGGATCTTTGTTAAAAGTTTGTTTCACCAACAAATAACACCTCGTTCTGCCTGTGATCAATATAGAAAGGTCTTCATTCATTCATCATTGCTTAATCAATGTCAAGGAATAGATAATTTGGGAAAATATCACACACATAATAAAACTTTGACAGCCTTTAGGCAGGACTATACCCTAAATAATTACCAGTATATTTGTGTTGCAGAGAAAAATCAGTACAATAAATCTGATACAACATTAAGCCAAGGCATAAGCCCCAGAAGACATCAGAAAACTCATTTTCTACATAACCATTGCAAACGTAAAAAATGTGAGAAAGCCTTTCATGAATGCACCAACCATGTCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGTAATAAGTGTATAGAAACTTTTATCCAGTCATCAAAACATACTCAGCCTCAGAGAATCCATATTGGAGAAAAGTCACACAGATGTAATAATGGTGAGAAAATCCTTAGTAAATTGTCAAGTCTAAGAAAACATAAGATAATCCATAATGAAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGCCTTTAACCATCGTTCACACCTTACTCAACATCAAATAATTCATACTGGAGAGAAACCATACAAATGTAAAGAATGTGGCAAAGCCTTCAATTCTAGTTCATATTTTACTAGACATCAGAGAATTCACACTGGAGAAAAACTTTACAAATGTAAAGCGTGTAGCAAATGTTTTACTCATTCTTCAAATCTTCTTGTGCATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTGGTAAATCATTTAAAGTGTCTTCAGCCCTTACTCAGCATGAGAGAATTCATACTGGAGAGAAACCCTATAAATGTAAGGAATGCAGCAAAGCCTTTAACTGTAGGTCGTACCTAACTAAACATCAGAGAATTCATACCGGAGAAAAACTTTACAAATGTAAATCATGTAGCAAATCTTTTTCTCGTTCCTCAAGTCTTATTGTCCACCAGAGAATTCATACTGGAGAAAAACCCTATAAATGCAAAGAATGTGGCAAAGCCTTTAATTGTAGTTCACGCCTTACTCAACATCAAAGAATTCATACCGGAGAGAAACCCTACATATGTAAAGAATGTGGCAAAGCCTTTAACTGTAGTTCATCCCTTACTAAACATCAGAGAATTCATACTGGAGTAAAACTTTACAAATGTAAAGCATGTAGCAAATCTTTCTCTCATTCCTCATGTCTTTCTGTGCATCAGATAACTCATACTGGAATGAAACCATATATATGTAAGGATTGTGGCATCTCCTTTAACCGGTCTTCAAACCTTAGACGACATCAGATGATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAATTATTTAATCGATGCTCAACCCTTACTCGACATAAAAGTATTCATACTAGAGAATTTCTATAGTTGTAGTAAATGTGAAAAGAGTTTTATCCAAAATTTAGAACTTAAAAATCACCATAGAGTTTATAGGGAAACCGACTTTACAGATTGAATAAATGGGAGGAAGTATTTAATCAGAACTCAAATCTGAATGTGTCAGGACTTACACAAAAAAGGACTAAAGCACAGATCCCCACTTTAAAATTAAATAAGAGTATTTGTTATGGAGGATTACTCTAAAGCCAAAGCAGTTACTTATTTTGTTATGTGTTTCAAATGAGCAAAAGCATTGATGTTTGGACAAGTAATTATTCAGTGAGCATGTTATTTGTATTGAAAACATTTGAAATTTGTATAAAGCAAATCATAATTTAATTCTCAGATTAGTTGTTATACCTTAATGCCTAGTGTTTATATAAAAACATATAGTCTATTTTTTCTGCATCAGAGCTGTAAGAGGTCGTTCTATAGTAGGTGAACATCATTAATATCAACTTATTTTCTTGGAAATTTAATGGCAAATGTAAAATACATGAAGAAAATCTAAAAGAGGCTCTTTGTGTTTGAATCATTAAACAGTAATATGTGTAAACATATAGTACATATTTAGGGCATTAGTATTCTATACTAAAGTAAAAGAGGAATATTCTGAATTTATTTATTACATCAATTGCTCCTTAAGTAGAAAAACACTGGTCAGTTATTTAAAATACTGGCATACCTTTATAGTACAATGAAGTAGTAATCTTGAATATTATTTGATGTGTTAAAAATAAAAACATCTTCACAGATATCAGAGAAAAGTGAAAACTCATATCTGAAAGATTATAAATATACTTTATATCAATTTTCCAGAGAACTTAAACTTCTAATAATATTGGTAATATTCTCATGGTTACTATTTTATATTCTTTCCTGCTTTTTGTAGCTACTGGTGTACTATGACAGTTATAATAAAGATTATATGGGGGTATACTTAAATGCCATACTTTTAAAATCCTGAATCATTGTTTATAAAGTTTTATTCAATATTTTTCTTTGCACATGCCCTTTTTCAGTCCAATTGAACACTTAGAGATTTTTCTTTGCTTTCACTTGCATTAAATGGAATATACAGATGTACTAAGATAGAAAGAAAAAGGTGAAAGAGAACTATACAGGCAGAAATGCATGTGTGTGTACCTGTCTTCAAATGGAAAAGAAAATGATGGATCACAACAGGAAACTGGAGAACTGTTGATTTATTACAGTTCTCAAATTAGAAACCTCCCAAATTCTTAAAGCTAAATTAGCTTTTCATTGCACACTGAATTTTTCTCTGATAAATCTAATGTCTTCTGGGTTCAGACTTTATCCCGTACAAATCCTTTTTTCTTGCCTGTGATTCATGTGAGAAGAATTATATAATTTTCTTATTTCAAAGCTTATAAACTATTACTTATAAGTTCTCATGGATTTTAAGAATGTTTTTGTAAAATTTAATGGTGCTGTCCAGGTGTGGTGGCTCACGCCGGTAATCCCAGCATTTCGGGAGGCTGAGGCAGGAGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGATATCTCGTCTCTACTGAAAATACAAAAATTAGCTGGATGTGGTGGCACACACCTGTAATCCCAGTTACTCAGGAGGCAAAGGCAGGAGAGTTGCTTGAACTGAGGAGATGAAGGTTACAGTGAGCCAAGTTTGTGCCTCACACTCCAGCCTGGGTAACAGAGTGAGACTCTGTCTATAAACAAACAAATTATCTGTCATCTACCTATAGACATAACCCTACTGAGGAGGATGGGGATAAAAGGTCTGCATCTAAGTCACTTTGAAAAACAGTATTTTGATTGAATGCTGTAAGACTACACAAATGCTGTATTCTACTGAGTAATATTTTATTTTCCTACAAGGATATGCATTAGCAATTCTGAAACAGTTTTACATGTTATTATATAATATATGGAGGCTGTTTCTCAGTGTAGTTCACAAAAGTTAAATGGTGAATGCTAGCATGAATCTTGTGGTCCTAGCCCAAAGTTGGAAATATCAGGATGAACCCATGACTAATACATCTGGATGGATGGATGGATGAATAGATATAAAGATAGGTAGGTAGGTAGGTAGGTAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAGCGATGTCTAAGATATCTGGAAGGATGGATGGATGGATGGATGGATAGTTAGATAGATAGATAGATAGATAGATACATAGATAGACGATTCAGAGATAGATAATGTTCCAAACTCTTGAGGGCCAAGAACTGGTGACATCTTGTATCAACACATCTAGGTCTACAATCTTGGTTTCTAAACAACATTCATTAAAAGGACCCAAGGGTTGAAGTTAGAAAATACAAGTTGAGCTAGAGTATCTTGTAAAGCCACAAAGAAAAAAGTGCTTAATAAAAATGATGGGGACTTTTCAAAGGGAGCCAACCTGAAAGACCTCCCAATGGTCCAAGCTCCAACAATATGAGCAATAAGTTATGATAGCTTTGGATTATGGCCCACAGAATAAAGTAATACTCATCTCTACTGTGTGAATAAAAGAGATTAAATAAGGAAAGAAGGAATGAAATCTACAATATTTAAAATACAGATCAATGTAGTTGGATAATGCAAAATAAATCAACACTAGAACATCACAGTAATAATTACCATAGGGAAGATTCCCCGAGGAATTCAAAAATTTCAGGAAAAACTTAAACACTAAAGAGTGTATTTGGGCCAGTCTCGGTGGCACATGCCTGTAATCCTAGCACTTTGGGAGGCCTCTGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTAGCCAACATGGTGAAACCCCGTCTCTATTAAAAATGAAAAAATTAGTCGGGCATGGTGGTGGGTACCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAGTCACTTGAACCTGGGAAGCAGAAGTTGTTTTGAGCCAAGATCATGCCATTGCACTCCAGCCTGGGCGACAAGAGCAGAACTCTGTCTCAAAAAAAAAAAAAGAAAAGAAAAGTGTATTTGCATATTTTAAGTATCTACCATCTAATATTTATTAATACAATTTTTTCTTAATTTCTTAGACTTGTGACTATTTGAAACAAATTATAACACTGTATTGTAGGATTTATAATTTGTAGTTGTAAAATTTATAACACATGGAATAAGAAGATAAATGGAACTGTTCTGTAGCAAATTTTTCATGTTTTATATTTAAGACAGTATAGTATTAACTCTAAAAGTATGGTGGATATGTTAAAGATTCATATTGTATTCCCTGCAGCAACCACTAAAAAATGCAAAGAAGTGTAATGTAAATGCTAAAAAAGGAGATAATTATAAAATATTTATTTGCACAATATTTATGTATCTTTTAGTCATAATAGCCCAAAACAGGAAACAACCAAAATGTCCATTAATAAGAAAATGAACTAATTGTATAGCTTTTAGAACAAAATACAGCTCAGGAATATGAAAAACCAAGCACACATCCTGGATAAAATTCATAAACCTGCTCAATGAGAGAAAAGTTGGACACAAAATTGTACTTTATGTATTTTGTATTTTATTCCAG
Seq C2 exon
GCAAAATAATCCTATGGTGAAAAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAAAGACAAGTGAATTTTCTGAGGGTGATGAAAGTGTTGCTTCGAAAAGGGGTGAAGTTTATATGGGTCTATTTATTTGTCTAACATGTACAGTTAAGGTTTATGCCTTGCAATGTATGTACATCTTCACAAAAAAAATCTTAAAAAAATTAAATGGGTGGGGGTAGGGAAAGGGTTGAAGTATAGATGAAGCAGAAGTGGTACATGATTAGTAGTTGAAGCTGGGGGCAGGTCTATATATTTTATTTTTATGTCTTTAATAGCATTTGTATAAATGTACAATATTCGTTTACAATGTTAGCTCAGGATCTTGTTTACCTTTGGACAGGGAGGGAGGGAGAAATTTATTTTCTGGGTAGGAGTAAAGCTGGTTCTATTCCTCAGTTATGTAAATTATCTGTTATAATCCAAAAAGCTTTACATGAATGTTTCTGTATGTAATGTGGTATATCAATAAAAAATTAAATATTACATATTTGCACCAGAATCCTAACTCACTATCTCAGAATGTTAGCAGCATTTTCTTTTGTTGTAAAGTGGAACACAATCTCATGGCATTAGCAGATGGGTTTGAATATTCTAAAGTATCAACGTCCTAATCTCATGGGCACCTCTTGGGTCTTTCCATTTTTGCCTTCATTTGCTAAGTGGCATGCTTTTGATTTTTTGAGATGAAACTTTTTCCCAGCAAAGTCTTTTCCCCACAGTGATGCTCTGAAAGCCAGGACACCTAGCACAGGACCCTGGGCATAGTATGCACTCAGTACATGTGGAGCATGTTGATCAGGAACAAAAGGAGTAGCAAAGGTCAGTTCCTGCAAAGGTGAGTAGATAATACAGGTATGACTGAAAGGCTGCAACTCAGGAGTAAACATTTTACATTCATTCAAGAGACAATTTGCAACTAGTACACCAAAAAATTTTGGCTTGAAGCAGTACTTTGGGGACTTGGCTAAACTCTGTAATCACTTGGAGAACTTTAAACAATACTGACGTCTGGGCCCTACTCCAGGGATTTTGATTTTATTGGTCTGTTGCAATTTAGGTTTTGGGAATTGTAGGGCCTCCGCATGTGACTGTAATGTGGAGCCAGGGGTGAGACCCACTGTTTCAGGGTGAGGGATGCATTAGCTGTGTGTGATTTCCATGTGTGCTGCAAGTATTTAACCTATGACCACTCCTGCATTTGGAGTCTTGGAAATTGCAGCAGGAGGAAATGTCTCTCTACAGATCTATTTTTTATGTCACTTGCTTTTAGAGTAAGAGGTTATTTCAGGCACAGTAATTTGATTTAATCTGTTTTCAAATACTAAATCTGAAAATACTAAAATGAAAAGAATTTGCAAATGTGAGAATTTGCAAACATGTGGAGTGTGTTCTTATGTGCTTTCCAGTTTCTCTGATGATAAGAAATGAGTAATGTTGGGCCTTGATTTCCTAAACTCAGCCCTCAGTCACTTTCTCAAATTATTTGAAGACCTTCCAAGTTGCTTCAGAAGCATTGTCCAAAGGAGATTATTCCCAGTAGTGAAGAATAATAGATGGATGAGAATGTCTAAGGAATCCTACTTCTGTCGCAGAAGTGGCACTCTCCAGAACCTCAAGGGCCCATGGAGTTCATGGGCTTTGGAGTCAGGCAGAGTTGACCCTGAGTCCCATCCCAGCCTCTTAATAGACTAGTTACTTGACTTGGAACAGTTATGCAAGACAAAGCACAATGATACTGATTGCAGTAATGGGAACAATTCATTCCTCTCTGTATCCATGCCCTTTGCAATGCATGTTTTTAGCTACTCCCATGGAGGGAAAGATTCTGTTTTTCCAGTCCTTGGATCTGACTGGCCTTATTTGCTGTGGCCAATTCATACTTACTGTTCTAGTGAAACAATTAGGCATGTTTTGCTCCTCATTCTAGACTTTAATTAAAATTAAAATTTTATGATATTTTATTTCTACTGTATTTTGCTGTATTCATTCTGCTCAGTATTCTAGTTCACCGGTCCTCTTATCTCTGTTTAATTTAGTGGTGAACCTATACATTGTCTGGTAACTTAATTTTGTATTTTCGTATTCTATTGGGCTGTCGTTCAAATGTGGCTTTTAAACTTCAGTTACTTGTTCTTTCTACAAAAATAAACATTGATTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302:ENST00000316491:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains