HsaEX1045437 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31753766-31761565:+
Coord C1 exon
chr16:31753766-31753900
Coord A exon
chr16:31754455-31754974
Coord C2 exon
chr16:31759357-31761565
Length
520 bp
Sequences
Splice sites
3' ss Seq
CCAGTATATTTGTGTTGCAGAGA
3' ss Score
6.83
5' ss Seq
AGCGTGTAG
5' ss Score
-17.4
Exon sequences
Seq C1 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGG
Seq A exon
AGAAAAATCAGTACAATAAATCTGATACAACATTAAGCCAAGGCATAAGCCCCAGAAGACATCAGAAAACTCATTTTCTACATAACCATTGCAAACGTAAAAAATGTGAGAAAGCCTTTCATGAATGCACCAACCATGTCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGTAATAAGTGTATAGAAACTTTTATCCAGTCATCAAAACATACTCAGCCTCAGAGAATCCATATTGGAGAAAAGTCACACAGATGTAATAATGGTGAGAAAATCCTTAGTAAATTGTCAAGTCTAAGAAAACATAAGATAATCCATAATGAAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGCCTTTAACCATCGTTCACACCTTACTCAACATCAAATAATTCATACTGGAGAGAAACCATACAAATGTAAAGAATGTGGCAAAGCCTTCAATTCTAGTTCATATTTTACTAGACATCAGAGAATTCACACTGGAGAAAAACTTTACAAATGTAAAGC
Seq C2 exon
GCAAAATAATCCTATGGTGAAAAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAAAGACAAGTGAATTTTCTGAGGGTGATGAAAGTGTTGCTTCGAAAAGGGGTGAAGTTTATATGGGTCTATTTATTTGTCTAACATGTACAGTTAAGGTTTATGCCTTGCAATGTATGTACATCTTCACAAAAAAAATCTTAAAAAAATTAAATGGGTGGGGGTAGGGAAAGGGTTGAAGTATAGATGAAGCAGAAGTGGTACATGATTAGTAGTTGAAGCTGGGGGCAGGTCTATATATTTTATTTTTATGTCTTTAATAGCATTTGTATAAATGTACAATATTCGTTTACAATGTTAGCTCAGGATCTTGTTTACCTTTGGACAGGGAGGGAGGGAGAAATTTATTTTCTGGGTAGGAGTAAAGCTGGTTCTATTCCTCAGTTATGTAAATTATCTGTTATAATCCAAAAAGCTTTACATGAATGTTTCTGTATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302_MULTIEX1-8/10=7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.265 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=10.9)
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0)
Main Inclusion Isoform:
ENST00000316491fB30919
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGTGGCCCTCAGAATTT
R:
TATAGACCTGCCCCCAGCTTC
Band lengths:
347-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains