HsaINT0188239 @ hg19
Intron Retention
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:26987]
Coordinates
chr16:31765087-31772886:+
Coord C1 exon
chr16:31765087-31765221
Coord A exon
chr16:31765222-31770677
Coord C2 exon
chr16:31770678-31772886
Length
5456 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TATTTTGTATTTTATTCCAGGCA
3' ss Score
8.52
Exon sequences
Seq C1 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGG
Seq A exon
GTAAGTGTGAAGGTCACAATGGATATTATGATGGACATACAAAATGTAAGACAACTACCTATAACAAAAACCTCACTGTTACAGGAGGTCAAAAACATGAAAAAACTCAATTTATGTCAGTTGCTTTTTCTAAACCATGTGTTTCTGTAAGTAAGTGTCAACATCAATTTTTGAAACTTACCTTTTCTTTTAAAGGAAATTTGGATAATCCGAATAGTGACTTAGTCCATGTTTCAAATAATCATTTAAACCAATTAAAATATAGAACTGGAGTAAATGTTCAGTCAAATATTTCTGAAAAGGAGAGATTTAAAAACGAGGAGGTGATTTCTAAATATGATCAATTTGATGGATCTTTGTTAAAAGTTTGTTTCACCAACAAATAACACCTCGTTCTGCCTGTGATCAATATAGAAAGGTCTTCATTCATTCATCATTGCTTAATCAATGTCAAGGAATAGATAATTTGGGAAAATATCACACACATAATAAAACTTTGACAGCCTTTAGGCAGGACTATACCCTAAATAATTACCAGTATATTTGTGTTGCAGAGAAAAATCAGTACAATAAATCTGATACAACATTAAGCCAAGGCATAAGCCCCAGAAGACATCAGAAAACTCATTTTCTACATAACCATTGCAAACGTAAAAAATGTGAGAAAGCCTTTCATGAATGCACCAACCATGTCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGTAATAAGTGTATAGAAACTTTTATCCAGTCATCAAAACATACTCAGCCTCAGAGAATCCATATTGGAGAAAAGTCACACAGATGTAATAATGGTGAGAAAATCCTTAGTAAATTGTCAAGTCTAAGAAAACATAAGATAATCCATAATGAAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGCCTTTAACCATCGTTCACACCTTACTCAACATCAAATAATTCATACTGGAGAGAAACCATACAAATGTAAAGAATGTGGCAAAGCCTTCAATTCTAGTTCATATTTTACTAGACATCAGAGAATTCACACTGGAGAAAAACTTTACAAATGTAAAGCGTGTAGCAAATGTTTTACTCATTCTTCAAATCTTCTTGTGCATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTGGTAAATCATTTAAAGTGTCTTCAGCCCTTACTCAGCATGAGAGAATTCATACTGGAGAGAAACCCTATAAATGTAAGGAATGCAGCAAAGCCTTTAACTGTAGGTCGTACCTAACTAAACATCAGAGAATTCATACCGGAGAAAAACTTTACAAATGTAAATCATGTAGCAAATCTTTTTCTCGTTCCTCAAGTCTTATTGTCCACCAGAGAATTCATACTGGAGAAAAACCCTATAAATGCAAAGAATGTGGCAAAGCCTTTAATTGTAGTTCACGCCTTACTCAACATCAAAGAATTCATACCGGAGAGAAACCCTACATATGTAAAGAATGTGGCAAAGCCTTTAACTGTAGTTCATCCCTTACTAAACATCAGAGAATTCATACTGGAGTAAAACTTTACAAATGTAAAGCATGTAGCAAATCTTTCTCTCATTCCTCATGTCTTTCTGTGCATCAGATAACTCATACTGGAATGAAACCATATATATGTAAGGATTGTGGCATCTCCTTTAACCGGTCTTCAAACCTTAGACGACATCAGATGATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAATTATTTAATCGATGCTCAACCCTTACTCGACATAAAAGTATTCATACTAGAGAATTTCTATAGTTGTAGTAAATGTGAAAAGAGTTTTATCCAAAATTTAGAACTTAAAAATCACCATAGAGTTTATAGGGAAACCGACTTTACAGATTGAATAAATGGGAGGAAGTATTTAATCAGAACTCAAATCTGAATGTGTCAGGACTTACACAAAAAAGGACTAAAGCACAGATCCCCACTTTAAAATTAAATAAGAGTATTTGTTATGGAGGATTACTCTAAAGCCAAAGCAGTTACTTATTTTGTTATGTGTTTCAAATGAGCAAAAGCATTGATGTTTGGACAAGTAATTATTCAGTGAGCATGTTATTTGTATTGAAAACATTTGAAATTTGTATAAAGCAAATCATAATTTAATTCTCAGATTAGTTGTTATACCTTAATGCCTAGTGTTTATATAAAAACATATAGTCTATTTTTTCTGCATCAGAGCTGTAAGAGGTCGTTCTATAGTAGGTGAACATCATTAATATCAACTTATTTTCTTGGAAATTTAATGGCAAATGTAAAATACATGAAGAAAATCTAAAAGAGGCTCTTTGTGTTTGAATCATTAAACAGTAATATGTGTAAACATATAGTACATATTTAGGGCATTAGTATTCTATACTAAAGTAAAAGAGGAATATTCTGAATTTATTTATTACATCAATTGCTCCTTAAGTAGAAAAACACTGGTCAGTTATTTAAAATACTGGCATACCTTTATAGTACAATGAAGTAGTAATCTTGAATATTATTTGATGTGTTAAAAATAAAAACATCTTCACAGATATCAGAGAAAAGTGAAAACTCATATCTGAAAGATTATAAATATACTTTATATCAATTTTCCAGAGAACTTAAACTTCTAATAATATTGGTAATATTCTCATGGTTACTATTTTATATTCTTTCCTGCTTTTTGTAGCTACTGGTGTACTATGACAGTTATAATAAAGATTATATGGGGGTATACTTAAATGCCATACTTTTAAAATCCTGAATCATTGTTTATAAAGTTTTATTCAATATTTTTCTTTGCACATGCCCTTTTTCAGTCCAATTGAACACTTAGAGATTTTTCTTTGCTTTCACTTGCATTAAATGGAATATACAGATGTACTAAGATAGAAAGAAAAAGGTGAAAGAGAACTATACAGGCAGAAATGCATGTGTGTGTACCTGTCTTCAAATGGAAAAGAAAATGATGGATCACAACAGGAAACTGGAGAACTGTTGATTTATTACAGTTCTCAAATTAGAAACCTCCCAAATTCTTAAAGCTAAATTAGCTTTTCATTGCACACTGAATTTTTCTCTGATAAATCTAATGTCTTCTGGGTTCAGACTTTATCCCGTACAAATCCTTTTTTCTTGCCTGTGATTCATGTGAGAAGAATTATATAATTTTCTTATTTCAAAGCTTATAAACTATTACTTATAAGTTCTCATGGATTTTAAGAATGTTTTTGTAAAATTTAATGGTGCTGTCCAGGTGTGGTGGCTCACGCCGGTAATCCCAGCATTTCGGGAGGCTGAGGCAGGAGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGATATCTCGTCTCTACTGAAAATACAAAAATTAGCTGGATGTGGTGGCACACACCTGTAATCCCAGTTACTCAGGAGGCAAAGGCAGGAGAGTTGCTTGAACTGAGGAGATGAAGGTTACAGTGAGCCAAGTTTGTGCCTCACACTCCAGCCTGGGTAACAGAGTGAGACTCTGTCTATAAACAAACAAATTATCTGTCATCTACCTATAGACATAACCCTACTGAGGAGGATGGGGATAAAAGGTCTGCATCTAAGTCACTTTGAAAAACAGTATTTTGATTGAATGCTGTAAGACTACACAAATGCTGTATTCTACTGAGTAATATTTTATTTTCCTACAAGGATATGCATTAGCAATTCTGAAACAGTTTTACATGTTATTATATAATATATGGAGGCTGTTTCTCAGTGTAGTTCACAAAAGTTAAATGGTGAATGCTAGCATGAATCTTGTGGTCCTAGCCCAAAGTTGGAAATATCAGGATGAACCCATGACTAATACATCTGGATGGATGGATGGATGAATAGATATAAAGATAGGTAGGTAGGTAGGTAGGTAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAGCGATGTCTAAGATATCTGGAAGGATGGATGGATGGATGGATGGATAGTTAGATAGATAGATAGATAGATAGATACATAGATAGACGATTCAGAGATAGATAATGTTCCAAACTCTTGAGGGCCAAGAACTGGTGACATCTTGTATCAACACATCTAGGTCTACAATCTTGGTTTCTAAACAACATTCATTAAAAGGACCCAAGGGTTGAAGTTAGAAAATACAAGTTGAGCTAGAGTATCTTGTAAAGCCACAAAGAAAAAAGTGCTTAATAAAAATGATGGGGACTTTTCAAAGGGAGCCAACCTGAAAGACCTCCCAATGGTCCAAGCTCCAACAATATGAGCAATAAGTTATGATAGCTTTGGATTATGGCCCACAGAATAAAGTAATACTCATCTCTACTGTGTGAATAAAAGAGATTAAATAAGGAAAGAAGGAATGAAATCTACAATATTTAAAATACAGATCAATGTAGTTGGATAATGCAAAATAAATCAACACTAGAACATCACAGTAATAATTACCATAGGGAAGATTCCCCGAGGAATTCAAAAATTTCAGGAAAAACTTAAACACTAAAGAGTGTATTTGGGCCAGTCTCGGTGGCACATGCCTGTAATCCTAGCACTTTGGGAGGCCTCTGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTAGCCAACATGGTGAAACCCCGTCTCTATTAAAAATGAAAAAATTAGTCGGGCATGGTGGTGGGTACCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAGTCACTTGAACCTGGGAAGCAGAAGTTGTTTTGAGCCAAGATCATGCCATTGCACTCCAGCCTGGGCGACAAGAGCAGAACTCTGTCTCAAAAAAAAAAAAAGAAAAGAAAAGTGTATTTGCATATTTTAAGTATCTACCATCTAATATTTATTAATACAATTTTTTCTTAATTTCTTAGACTTGTGACTATTTGAAACAAATTATAACACTGTATTGTAGGATTTATAATTTGTAGTTGTAAAATTTATAACACATGGAATAAGAAGATAAATGGAACTGTTCTGTAGCAAATTTTTCATGTTTTATATTTAAGACAGTATAGTATTAACTCTAAAAGTATGGTGGATATGTTAAAGATTCATATTGTATTCCCTGCAGCAACCACTAAAAAATGCAAAGAAGTGTAATGTAAATGCTAAAAAAGGAGATAATTATAAAATATTTATTTGCACAATATTTATGTATCTTTTAGTCATAATAGCCCAAAACAGGAAACAACCAAAATGTCCATTAATAAGAAAATGAACTAATTGTATAGCTTTTAGAACAAAATACAGCTCAGGAATATGAAAAACCAAGCACACATCCTGGATAAAATTCATAAACCTGCTCAATGAGAGAAAAGTTGGACACAAAATTGTACTTTATGTATTTTGTATTTTATTCCAG
Seq C2 exon
GCAAAATAATCCTATGGTGAAAAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAAAGACAAGTGAATTTTCTGAGGGTGATGAAAGTGTTGCTTCGAAAAGGGGTGAAGTTTATATGGGTCTATTTATTTGTCTAACATGTACAGTTAAGGTTTATGCCTTGCAATGTATGTACATCTTCACAAAAAAAATCTTAAAAAAATTAAATGGGTGGGGGTAGGGAAAGGGTTGAAGTATAGATGAAGCAGAAGTGGTACATGATTAGTAGTTGAAGCTGGGGGCAGGTCTATATATTTTATTTTTATGTCTTTAATAGCATTTGTATAAATGTACAATATTCGTTTACAATGTTAGCTCAGGATCTTGTTTACCTTTGGACAGGGAGGGAGGGAGAAATTTATTTTCTGGGTAGGAGTAAAGCTGGTTCTATTCCTCAGTTATGTAAATTATCTGTTATAATCCAAAAAGCTTTACATGAATGTTTCTGTATGTAATGTGGTATATCAATAAAAAATTAAATATTACATATTTGCACCAGAATCCTAACTCACTATCTCAGAATGTTAGCAGCATTTTCTTTTGTTGTAAAGTGGAACACAATCTCATGGCATTAGCAGATGGGTTTGAATATTCTAAAGTATCAACGTCCTAATCTCATGGGCACCTCTTGGGTCTTTCCATTTTTGCCTTCATTTGCTAAGTGGCATGCTTTTGATTTTTTGAGATGAAACTTTTTCCCAGCAAAGTCTTTTCCCCACAGTGATGCTCTGAAAGCCAGGACACCTAGCACAGGACCCTGGGCATAGTATGCACTCAGTACATGTGGAGCATGTTGATCAGGAACAAAAGGAGTAGCAAAGGTCAGTTCCTGCAAAGGTGAGTAGATAATACAGGTATGACTGAAAGGCTGCAACTCAGGAGTAAACATTTTACATTCATTCAAGAGACAATTTGCAACTAGTACACCAAAAAATTTTGGCTTGAAGCAGTACTTTGGGGACTTGGCTAAACTCTGTAATCACTTGGAGAACTTTAAACAATACTGACGTCTGGGCCCTACTCCAGGGATTTTGATTTTATTGGTCTGTTGCAATTTAGGTTTTGGGAATTGTAGGGCCTCCGCATGTGACTGTAATGTGGAGCCAGGGGTGAGACCCACTGTTTCAGGGTGAGGGATGCATTAGCTGTGTGTGATTTCCATGTGTGCTGCAAGTATTTAACCTATGACCACTCCTGCATTTGGAGTCTTGGAAATTGCAGCAGGAGGAAATGTCTCTCTACAGATCTATTTTTTATGTCACTTGCTTTTAGAGTAAGAGGTTATTTCAGGCACAGTAATTTGATTTAATCTGTTTTCAAATACTAAATCTGAAAATACTAAAATGAAAAGAATTTGCAAATGTGAGAATTTGCAAACATGTGGAGTGTGTTCTTATGTGCTTTCCAGTTTCTCTGATGATAAGAAATGAGTAATGTTGGGCCTTGATTTCCTAAACTCAGCCCTCAGTCACTTTCTCAAATTATTTGAAGACCTTCCAAGTTGCTTCAGAAGCATTGTCCAAAGGAGATTATTCCCAGTAGTGAAGAATAATAGATGGATGAGAATGTCTAAGGAATCCTACTTCTGTCGCAGAAGTGGCACTCTCCAGAACCTCAAGGGCCCATGGAGTTCATGGGCTTTGGAGTCAGGCAGAGTTGACCCTGAGTCCCATCCCAGCCTCTTAATAGACTAGTTACTTGACTTGGAACAGTTATGCAAGACAAAGCACAATGATACTGATTGCAGTAATGGGAACAATTCATTCCTCTCTGTATCCATGCCCTTTGCAATGCATGTTTTTAGCTACTCCCATGGAGGGAAAGATTCTGTTTTTCCAGTCCTTGGATCTGACTGGCCTTATTTGCTGTGGCCAATTCATACTTACTGTTCTAGTGAAACAATTAGGCATGTTTTGCTCCTCATTCTAGACTTTAATTAAAATTAAAATTTTATGATATTTTATTTCTACTGTATTTTGCTGTATTCATTCTGCTCAGTATTCTAGTTCACCGGTCCTCTTATCTCTGTTTAATTTAGTGGTGAACCTATACATTGTCTGGTAACTTAATTTTGTATTTTCGTATTCTATTGGGCTGTCGTTCAAATGTGGCTTTTAAACTTCAGTTACTTGTTCTTTCTACAAAAATAAACATTGATTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-ZNF720:NM_001130913:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)