HsaEX1045451 @ hg38
Exon Skipping
Gene
ENSG00000214652 | ZNF727
Description
zinc finger protein 727 [Source:HGNC Symbol;Acc:HGNC:22785]
Coordinates
chr7:64069514-64078549:+
Coord C1 exon
chr7:64069514-64069609
Coord A exon
chr7:64070827-64070856
Coord C2 exon
chr7:64077276-64078549
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCTATACTCTCTTCTTCTAGGAG
3' ss Score
10.62
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCTTGCTATCTTTAAGCCAGACTTGATTACCTATCTGGAGCAAAGAAAAGAGCCTTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACACCCAG
Seq A exon
GAGTCCAACCTTATTATATTCTCCATAGAG
Seq C2 exon
CTGGCTCTTTGCATTTTACTGCAGAGATATTGCTGGAGCACGACATAAACGATTCATTTCAAAAAGTGATCCTGAGAAAATCTGGAAGCTGTGACCTTAATACTTTACGTTTAAAGAAAGACTACCAACGTGTGGGTAATTGCAAGGGGCAGAAAAGCAGTTATAATGGCATTCATCAATGTTTGTCAGCTACCCGTAGCAAAACCTGTCAATATAATAAATGTGGCAAAGCTTTTGGGTTGTGCTCAATCTTCACTGAACATAAGAAAATTTTTAGCAGAGAGAAATGCTACAAATGTGAAGAATGTGGCAAAGACTGTAGGTTGTCAGATTTTACCATACAGAAGAGAATTCATACTGCAGATAGAAGTTACAAATGTGAAGAATGTGGCAAAGCCTGTAAAAAGTTCTCAAACCTTACTGAACATAATAGAGTTCATACTGGAAAGAAACCCTACAAATGTGAAGAATGTGGCAAAACATTTACCTGTTCCTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214652_MULTIEX1-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.1)
Main Inclusion Isoform:
ENST00000456806fB30930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAAAGAAAAGAGCCT
R:
TCGTTTATGTCGTGCTCCAGC
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains