HsaEX1045545 @ hg38
Exon Skipping
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:HGNC:13159]
Coordinates
chr12:133048753-133060434:+
Coord C1 exon
chr12:133048753-133048848
Coord A exon
chr12:133056954-133057568
Coord C2 exon
chr12:133060361-133060434
Length
615 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTCCTTTATAGAAG
3' ss Score
9.54
5' ss Seq
CACATACAG
5' ss Score
-12.27
Exon sequences
Seq C1 exon
GGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGATGGAGAAATTCCAAGTTCAGATTCTCCAG
Seq A exon
AAGTCTGGAAAGTAGATGGTAACATGATGTGGCACCAGGATAACCAAGACAAGCTTAAAATTATAAAAAGAGGTCATGAATGTGATGCATTTGGAAAAAATTTCAATCTGAACATGAACTTTGTTCCTTTAAGGAAATCAAACAGTGAAGGTGACTTAGATGGATTGATTTTAAAACATCATTTAGATTTGCTTATTCCAAAAGGAGATTATGGAAAAGCAGAATCAGATGACTTTAATGTGTTTGATAATTTTTTTCTCCATTCCAAGCCTGAGGATACTGATACCTGGTTAAAATACTATGACTGTGATAAATATAAAGAGAGCTATAAAAAGTCACAGATTATCATATATCATAGAAATCGTTTAGGGGAGAAACTCTATGAATGCAGTGAATGTAGGAAGCGCTTCAGTAAGAAACCAAGTCTCATTAAACATCAGAGCAGACATATAAGAGACATAGCCTTTGGCTGTGGTAATTGTGGCAAAACCTTTCCCCAGAAGTCTCAGTTTATTACACATCACAGAACTCATACAGGAGAAAAACCTTATAATTGTAGCCAGTGTGGGAAAGCCTTCTCCCAAAAGTCACAGCTCACATCCCATCAGCGGACAC
Seq C2 exon
CAAATTTCTGTGGTCCCTGGAAAAGTACAGATGATCCTGGACTTACAGTGGGGTTACCTCCCAATAAACCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040_MULTIEX1-7/9=4-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.083 C2=0.593
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF0009621=zf-C2H2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9)
C2:
NO
Main Skipping Isoform:
ENST00000535439fB30977
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains