HsaEX1045547 @ hg38
Exon Skipping
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:HGNC:13159]
Coordinates
chr12:133048753-133063304:+
Coord C1 exon
chr12:133048753-133048848
Coord A exon
chr12:133060361-133060450
Coord C2 exon
chr12:133063000-133063304
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATGCCTATTTTATCTTCTAGCAA
3' ss Score
7.9
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGATGGAGAAATTCCAAGTTCAGATTCTCCAG
Seq A exon
CAAATTTCTGTGGTCCCTGGAAAAGTACAGATGATCCTGGACTTACAGTGGGGTTACCTCCCAATAAACCCATTGTAAGTTGAAAACATT
Seq C2 exon
AAAGCTTCTAGAAAGCTAGTACTATCTTTTTTGTCTGTGTAATTTTTGCATCACAAGCTATATTTAAATGTGGGTGCAGTGAGTGGCTGTTTTCTGCCACATGGAGAAACATGGTCTGCAGTGAGAGAGAAGAATGAAGCCATGATGAAAGCAAAATCAAGAAAGAGTCCCGATTGTGTTCCAGTACCTGGTTCTTCTGGTCTTCATGTTCAGGTCCACCTCTGCCCTTTTCATGTCTTGATTGTTGAATTCTTCTGTGAGATACTCCAAATATCCTAATAAATTCTCATGTTTGCTTCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040_MULTIEX1-9/9=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.593 C2=0.098
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000535439fB30977
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAAGAGCCGTGGGTAG
R:
ACCATGTTTCTCCATGTGGCA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains