HsaEX1046055 @ hg38
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 [Source:HGNC Symbol;Acc:HGNC:6642]
Coordinates
chr11:33864602-33881887:-
Coord C1 exon
chr11:33881824-33881887
Coord A exon
chr11:33870345-33870569
Coord C2 exon
chr11:33864602-33864817
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTGGCTCTGCTCTAGGCG
3' ss Score
8.23
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
TAACAACTGCTCTGAAAAGAAGATATTTTTCAACCTGAACTTGCAGTAGCTAGTGGAGAGGCAG
Seq A exon
GCGTCCCCAGCCCGTGCAGTCCCGGCTGGCGCACCACCATCGCCTCTGCAGAGCGCGGCCGCAGCCCGGAGCCCGCAGCCCGGAGCCCGCAGCCTGGGGCCCGCAGCCCGTAGCCCGCAGCCCGCAGAGCCGCGCTGTCCGGGGCATCCCAGTGCACGGCGTCCGTGGACCTGGGACCTCGAACCTGGGACGGGCGGAAAATCCACTGGGAACACTTGCATTTCT
Seq C2 exon
GGAACCAGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATTGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGTGAGGTGGGGCGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363_MULTIEX1-2/5=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0041217=LIM=PU(94.9=76.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGCTCTGAAAAGAAGATATT
R:
GAGATAGTCTCTCCGGCAGA
Band lengths:
276-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains