HsaEX0036058 @ hg38
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 [Source:HGNC Symbol;Acc:HGNC:6642]
Coordinates
chr11:33864602-33881887:-
Coord C1 exon
chr11:33881824-33881887
Coord A exon
chr11:33869901-33869987
Coord C2 exon
chr11:33864602-33864817
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGAATCGTGATCAGGAA
3' ss Score
4.87
5' ss Seq
ACGGTCCCC
5' ss Score
-3.83
Exon sequences
Seq C1 exon
TAACAACTGCTCTGAAAAGAAGATATTTTTCAACCTGAACTTGCAGTAGCTAGTGGAGAGGCAG
Seq A exon
GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGAGAGAGACGCACG
Seq C2 exon
GGAACCAGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATTGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGTGAGGTGGGGCGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363_MULTIEX1-3/5=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0041217=LIM=PU(94.9=76.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTAGCTAGTGGAGAGGC
R:
CAGCCACAGAGGTCGCAG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development