RnoEX0050261 @ rn6
Exon Skipping
Gene
ENSRNOG00000009401 | Lmo2
Description
LIM domain only 2 [Source:RGD Symbol;Acc:1307101]
Coordinates
chr3:93909156-93921021:+
Coord C1 exon
chr3:93909156-93909273
Coord A exon
chr3:93920420-93920674
Coord C2 exon
chr3:93920802-93921021
Length
255 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGAATCGTGATCAGGAA
3' ss Score
4.87
5' ss Seq
AAGGTTAAG
5' ss Score
3.39
Exon sequences
Seq C1 exon
AACACCACCACTCACACAAATGCATACTCTTCTCTCCTGACTGCTTAAACTGAGTTCCTGACATTTTCTGGAAAGAGGGCATTTCTACCTGGATGTGCAGTGACCTGTGGAGAGGCAG
Seq A exon
GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCGCGAGAGAGGAGGGAGCCCCGGGAGAGCCGCGCGGTCCGCTCCCCGCCCCCAGGCCGCCGCCCCCTCTCTGCCCTCGGCGCCCCGACCCCAGCGAAGGTGCGAGGGGTTCGGGGCGGCCGGGCGGAGCCGGCGACTGCGCGCGATCGGGACCGGGCGGCGGCGGCGGCGGCTGTGGTGACGGCAGCGGGACCGGGATGGAAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009401_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.690
Domain overlap (PFAM):
C1:
NA
A:
PF124483=Milton=PU(2.4=66.7)
C2:
PF124483=Milton=FE(88.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACTCTTCTCTCCTGACTGC
R:
TTTCGATGGCCGAGGACATTG
Band lengths:
295-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]