MmuEX0026617 @ mm9
Exon Skipping
Gene
ENSMUSG00000032698 | Lmo2
Description
LIM domain only 2 [Source:MGI Symbol;Acc:MGI:102811]
Coordinates
chr2:103809685-103810869:+
Coord C1 exon
chr2:103809685-103809878
Coord A exon
chr2:103810268-103810522
Coord C2 exon
chr2:103810650-103810869
Length
255 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGAATCGTGATCAGGAA
3' ss Score
4.87
5' ss Seq
AAGGTTAAG
5' ss Score
3.39
Exon sequences
Seq C1 exon
GGCGCACCTAGCGCGTGAGGTTCCTGGTCACACAGCTTGCGCCCCTCTCTGGAGAGCAGTCGCAGCTACTAGCTTGCCGCCAGCAGAGCCGCACTGTCTCGGGCATCGCAGAGCACCACGACTGTGGACTTGGGACCTCGAACCCGAGACGAGCGCGCGCTAGCCAGCCATTAGCAACGCTTGCATTTCTGCAG
Seq A exon
GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCGCGAGAGAGGAGGGAGCCTGGGGAGAGCCGCGCGGTCAGCTCCCCGCCCCCAGGCCGCCGCCCCCTCACTGCCCCCGGCGCCCCGACCCCGGCGAAGGTGCGAGGGGCTCGGGGCGACCGGGCGGAGCCGGCTACTGCGCGCGATCGGGACCGGGCGGCGGCGGCGGCGGCTGTGGTGACGGCAGCGGGACCGGGATGGAAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032698-'2-9,'2-3,4-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.631
Domain overlap (PFAM):
C1:
NA
A:
PF124483=Milton=PU(2.4=66.7)
C2:
PF124483=Milton=FE(88.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTGGTCACACAGCTTG
R:
CTAGCTGCCTGGACTCGGAC
Band lengths:
297-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types