HsaEX0036058 @ hg19
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:6642]
Coordinates
chr11:33890892-33892075:-
Coord C1 exon
chr11:33891887-33892075
Coord A exon
chr11:33891371-33891533
Coord C2 exon
chr11:33890892-33891132
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGAATCGTGATCAGGAA
3' ss Score
4.87
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
CGCCTCTGCAGAGCGCGGCCGCAGCCCGGAGCCCGCAGCCCGGAGCCCGCAGCCTGGGGCCCGCAGCCCGTAGCCCGCAGCCCGCAGAGCCGCGCTGTCCGGGGCATCCCAGTGCACGGCGTCCGTGGACCTGGGACCTCGAACCTGGGACGGGCGGAAAATCCACTGGGAACACTTGCATTTCTGTAG
Seq A exon
GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGAGAGAGACGCACGGTCCCCTCCCCGCCCCTAGGCCGCCGCCCCCTCTCTGCCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGGCGGAGCGCCGGAGCAAGCGGAGGCGCAGGAGCGGCGGCGACGGCGGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACCCCGCCTCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363-'6-8,'6-5,8-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.914
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGGGAACACTTGCATT
R:
TTTCGATGGCCGAGGACATTG
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)