HsaEX0036059 @ hg19
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:6642]
Coordinates
chr11:33886148-33891533:-
Coord C1 exon
chr11:33891447-33891533
Coord A exon
chr11:33890892-33891132
Coord C2 exon
chr11:33886148-33886363
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGAGAGAGACGCACG
Seq A exon
GGAGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGGCGGAGCGCCGGAGCAAGCGGAGGCGCAGGAGCGGCGGCGACGGCGGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACCCCGCCTCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCTTCAGA
Seq C2 exon
GGAACCAGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATTGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGTGAGGTGGGGCGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363_MULTIEX1-4/5=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.914 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(94.9=76.7),PF103674=Vps39_2=PU(19.6=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGAAACCAGAGACAGAGGG
R:
GAGATAGTCTCTCCGGCAGA
Band lengths:
295-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)