RnoEX0050259 @ rn6
Exon Skipping
Gene
ENSRNOG00000009401 | Lmo2
Description
LIM domain only 2 [Source:RGD Symbol;Acc:1307101]
Coordinates
chr3:93909156-93926489:+
Coord C1 exon
chr3:93909156-93909273
Coord A exon
chr3:93920802-93921021
Coord C2 exon
chr3:93926274-93926489
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AACACCACCACTCACACAAATGCATACTCTTCTCTCCTGACTGCTTAAACTGAGTTCCTGACATTTTCTGGAAAGAGGGCATTTCTACCTGGATGTGCAGTGACCTGTGGAGAGGCAG
Seq A exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
Seq C2 exon
GGAACCCGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCACGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGCCGGCGCCTCTACTACAAGCTGGGACGGAAGCTGTGCAGGCGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009401-'0-10,'0-8,5-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.690 C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
PF124483=Milton=FE(88.0=100)
C2:
PF124483=Milton=PD(8.4=9.6),PF0041217=LIM=PU(94.9=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCACTCACACAAATGCA
R:
TCCCAGCTTGTAGTAGAGGCG
Band lengths:
302-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]