MmuEX6103308 @ mm9
Exon Skipping
Gene
ENSMUSG00000032698 | Lmo2
Description
LIM domain only 2 [Source:MGI Symbol;Acc:MGI:102811]
Coordinates
chr2:103809685-103816377:+
Coord C1 exon
chr2:103809685-103809878
Coord A exon
chr2:103810650-103810869
Coord C2 exon
chr2:103816162-103816377
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGCGCACCTAGCGCGTGAGGTTCCTGGTCACACAGCTTGCGCCCCTCTCTGGAGAGCAGTCGCAGCTACTAGCTTGCCGCCAGCAGAGCCGCACTGTCTCGGGCATCGCAGAGCACCACGACTGTGGACTTGGGACCTCGAACCCGAGACGAGCGCGCGCTAGCCAGCCATTAGCAACGCTTGCATTTCTGCAG
Seq A exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
Seq C2 exon
GGAACCCGTGGATGAGGTGCTGCAGATACCCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGGAGGCGCCTCTACTACAAGCTGGGACGGAAATTGTGCAGGAGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032698-'2-13,'2-9,5-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.631 C2=0.028
Domain overlap (PFAM):
C1:
NA
A:
PF124483=Milton=FE(88.0=100)
C2:
PF124483=Milton=PD(8.4=9.6),PF0041217=LIM=PU(94.9=76.7),PF103674=Vps39_2=PU(9.8=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTGGTCACACAGCTTG
R:
GGCAATCCTCATGCCAGTACT
Band lengths:
298-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: